Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0187 ATGAATGATATCACTACCACACCCTCTCCTTCTCCTTCCCCTTCTTCAACCATGGCCTTTCCACCTTCTCACACTTTCTTGTTCCAAACCCATGAAGATCATGACCACCAACACCATCTCCGTTCATCTTCTTCCTCTTTCAACGCCTTCCCCTCCTTCCCACCCCAACACTTTCAAGGGGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCCATGTCATTTTCAGGCATAGAAAACAAGTGCGACGAAGTGCATGGGGACGATGAGTTATCAGATGATGGATCTCAGATTGGGGAGAAGAAGAAGAGGTTGAGTTTGGAGCAAGTGAAGGCTCTTGAAAAGAGCTTTGAGTTGGGTAACAAGCTTGAACCTGAAAGGAAAATGCAGCTTGCTAAGGCCTTGGGGCTTCAACCAAGACAGATCGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAAGAGTATGAAGTTCTCAAGAAGCAATTTGAAGCTGTGAAGGCTGATAATGAGTCCCTTAAGGCTCAGAATCAGAAGCTACATGCAGAGTTACAAACTCTAAAGGGTAGAGATTGTTGTGAAACTGGAACAAGAAGCCTCAAAAAAGAAACTGAAGGTTCTTGGAGTAATGGAAGTGAAAACAGTTCAGATATCAATTTGGATCTCTCAAGAACACCAGTGATGAATAGTCCTGTGTCTTCTCAGAATGGTAAAAGCCTTCTACCCACTTCCCTAAAGCCCACAAGCATAACTCAGCTTCTACAATGTTCATCAAGATCAGACCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAACATTGATGAGCAGCAGAATTTTTGGCCTTGGCCTGAGCAACACCAGTTTCATTAA 891 0.4388 MNDITTTPSPSPSPSSTMAFPPSHTFLFQTHEDHDHQHHLRSSSSSFNAFPSFPPQHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQIGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNESLKAQNQKLHAELQTLKGRDCCETGTRSLKKETEGSWSNGSENSSDINLDLSRTPVMNSPVSSQNGKSLLPTSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPEQHQFH* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0187 296 Pfam Homeobox associated leucine zipper 156 195 IPR003106 GO:0006355|GO:0043565
Apr6g0187 296 SUPERFAMILY Homeodomain-like 91 158 IPR009057 -
Apr6g0187 296 Coils Coil 148 196 - -
Apr6g0187 296 Gene3D - 93 172 - -
Apr6g0187 296 PRINTS Lambda-repressor HTH signature 127 136 IPR000047 GO:0003677
Apr6g0187 296 PRINTS Lambda-repressor HTH signature 136 152 IPR000047 GO:0003677
Apr6g0187 296 MobiDBLite consensus disorder prediction 1 55 - -
Apr6g0187 296 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Apr6g0187 296 MobiDBLite consensus disorder prediction 208 225 - -
Apr6g0187 296 MobiDBLite consensus disorder prediction 1 24 - -
Apr6g0187 296 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Apr6g0187 296 Pfam Homeodomain 101 154 IPR001356 GO:0003677
Apr6g0187 296 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 18 296 - -
Apr6g0187 296 SMART HOX_1 99 160 IPR001356 GO:0003677
Apr6g0187 296 MobiDBLite consensus disorder prediction 204 225 - -
Apr6g0187 296 CDD homeodomain 101 157 IPR001356 GO:0003677
Apr6g0187 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 296 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0187 Apr-Chr6 1845658 1847911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0187 18 291 Homeobox Transcription Factor Family AT3G01220 50.890 2.66e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr6g0187 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0187 K09338 - gmx:100790803 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0187 6 1845658 1847911 Apr6g0187 6 1845658 1847911 ECH
Apr6g0187 6 1845658 1847911 Apr4g2438 4 33300027 33301895 PCT