Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0186 ATGAGCGAGGAATTAATCATAGCTTCTTCCCTTGTTCGAAGGTTCACCTTTGATGATCTTAAGGTGGCAACAAGGAATTTTAAAGCTGAGAATTTTCTTGGTGAGGGTGGATTTGGAACTGTATTGAAAGGTTGGATCAGTCAGTTTGGGAACTATCCATCAAGGTCTGAAGGGGGACTTCCAGTTGCTGTCAAGTGCCTAAAGCCGAATGGATTTCAGGGTCACAGAGAATGGCTTGCTGAAATTTGTTATCTCAGTGAACTTCATCATCCCAATCTGGTCAAATTGATTGGCTTTTGCATGGAAGATGAGAAAAGGCTGCTTGTATACGAGTTCATGCCTAGAGGAAGCTTAGAAAACCATCTCTTCAAGAGGTGTGTGCCACTTCCATGGCCCATTAGAGTTAAAATTGTGCTTGGTGCCGCAAAGGGCCTTGCTTTTTTGCATGAGGAAGCTGCAAGGCCATTGATTTTTCGAGACTTCAAAACATCTAATATCCTCTTGGATGCGAACTTCAATGCAAAACTTTCCGACTTTGGGCTGGCTAAAGATGCTCCAGTTGGAGATGCAAGCCATGTGTCAACAAGAGTTATGGGAACACAAGGTTACGCTGCTCCTGAGTATGTCATGACAGGACACCTCACATCAAAGAGTGATGTGTATAGTTTCGGGGTGGTTCTACTTGAAATGTTGACTGGTAGAAGAGCTATAGATAAACGAAAGCCAAGAGGGCAGCAGAACTTGGTGGAATGGTTGCGTCCCCAACTTAGGAAGAAAGCAAGTTTGCACTATATGATGGATCCAAGACTTGAAGGTAATTTCTCATTAATTGGTGCTCATAGGGCAATGAAGTTGGCTACTCAATGCCTTCACCCTGATCCAAAAGCAAGACCCCTCATGAGTGAAGTGGTTCGTATGTTGAAGTCTTTGCCTCTTCGTGATGATGTAGCTTCTAGTTCCTCAACCTCTCTTAGGAAAATGCAGGGAGCACCCTCTAACAACCGTGCTAATCGATATGGTTTGAGGACTGGTTCATCGTCAAACGTGCCAAGGCGTTTTCAAGCCTCGCCATTGAGCCTTGACTACCCTCTTCCTTCACCAGCTCCTAATGGTGGAAAAGCTTGA 1125 0.4453 MSEELIIASSLVRRFTFDDLKVATRNFKAENFLGEGGFGTVLKGWISQFGNYPSRSEGGLPVAVKCLKPNGFQGHREWLAEICYLSELHHPNLVKLIGFCMEDEKRLLVYEFMPRGSLENHLFKRCVPLPWPIRVKIVLGAAKGLAFLHEEAARPLIFRDFKTSNILLDANFNAKLSDFGLAKDAPVGDASHVSTRVMGTQGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAIDKRKPRGQQNLVEWLRPQLRKKASLHYMMDPRLEGNFSLIGAHRAMKLATQCLHPDPKARPLMSEVVRMLKSLPLRDDVASSSSTSLRKMQGAPSNNRANRYGLRTGSSSNVPRRFQASPLSLDYPLPSPAPNGGKA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0186 374 PANTHER TYROSINE KINASE FAMILY PROTEIN 2 344 - -
Apr6g0186 374 Pfam Protein tyrosine and serine/threonine kinase 29 307 IPR001245 GO:0004672|GO:0006468
Apr6g0186 374 SUPERFAMILY Protein kinase-like (PK-like) 13 318 IPR011009 -
Apr6g0186 374 MobiDBLite consensus disorder prediction 315 374 - -
Apr6g0186 374 MobiDBLite consensus disorder prediction 315 354 - -
Apr6g0186 374 ProSiteProfiles Protein kinase domain profile. 27 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0186 374 PANTHER OS01G0588500 PROTEIN-RELATED 2 344 - -
Apr6g0186 374 ProSitePatterns Protein kinases ATP-binding region signature. 33 65 IPR017441 GO:0005524
Apr6g0186 374 CDD STKc_IRAK 33 310 - -
Apr6g0186 374 Gene3D Transferase(Phosphotransferase) domain 1 113 328 - -
Apr6g0186 374 Gene3D Phosphorylase Kinase; domain 1 3 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0186 Apr-Chr6 1826585 1828563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0186 13 352 Glycoside Hydrolase AT3G07070 47.740 2.65e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr6g0186 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0186 - - ccaj:109817012 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0186 6 1826585 1828563 Apr9g3016 9 37014129 37017819 ECH
Apr6g0186 6 1826585 1828563 Apr6g0186 6 1826585 1828563 ECH
Apr3g0892 3 23091232 23094432 Apr6g0186 6 1826585 1828563 ECH