Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0179 ATGGAAAAAATAATGGTGAAAAGTGCAACCAAGGTTGCTTTCATCTTCTTGGTTACTTTAGCCATTACCATTCCATGCCTTGAGGCTGGCATTGGTGAGTTTGATGATTATCTCAAAGTTCAATCCGAGGAAGCCCGACAACGTGCTCTTGAGTCCTACGTCCCAGACCCTGAAGCTGTTACTCAAGAACTTAATTTTCATGTTCATTTGTACGCAGCAAACAGCACACTTAGGAGGGAACTAAGGCAGAAACCTAAAAATAACAAAGTATGTGAGGCCACCAACCCCATTGACACTTGCTGGAGGTGCGACAAAGATTGGGCCAGTAATCGTTTTAAGTTAGCTGAATGCGGCAAAGGGTTCGGAAGAAGGGCCACTGGTGGGCTTGGTGGGCCCATCTACGTTGTCACTGATGAATCCGATGATGACATGGAGAACCCACGACCTGGGACTCTCCGTTATGGTGTTGTCCTAAAGGGCCCAGTGTGGATCATATTCCAACGTAGCATGGTCATTACGTTGAAGCAAGAATTGATGGTTTCCTCGGACAAGACCATTGATGGTCGTGGGGCCAATGTTCAAATTAGAGATGGCGCTGGCATCACTTTGCAATTTGTTAGTAATGTCATCATCCATGGTATTCGCATTAAGAACATCTTATCTAAAGAAGGTGGCATGATTAAGGACTCTTATAACCATATTGGTCTAAGAACTAGAAGTGATGGTGATGCCATCTCCATTTTTACGGCTTCCAACCTTTGGATCGATCATGTTTCCCTCTCTAACTGTGCTGATGGTCTTATCGATGTTATCCAGGGTTCCACTGCCATCACCATCTCAAATTGCCATATGACCAAACATAACGATGTGATGCTTTTTGGAGCTAATGATCAACACAGTGAAGATAAGATCATGCAGATAACAGTGGCATTCAACCACTTTGGCCAGGGATTGATTCAGAGGATGCCTAGATGCAGATTTGGTTTTGTGCATGTTTTGAACAATGATTACACTCACTGGATGATGTATGCAATTGGTGGTAGCTCAGGACCTACCATTCTGAGCCAAGGCAATCGCTTCATTGCTCCTAACAATGATGCTGCCAAAGAGATCACACATAGAGACTATGCATCACCAGAAGTGTGGAAGAATTGGCAGTGGCAATCAGAAATGGACTTGTTCATGAATGGTGCCAAGTTCACTACTTCAGGAGCACCCATTAAGATTTCATACAACAAAGGTCTCATCATGAAACCAAGAGATGGTGCTCATGTCAGCAGGCTAACAAGACATGCTGGTGCCCTCAGTTGTGTTGTTGGCAGGCCTTGTTAG 1332 0.4437 MEKIMVKSATKVAFIFLVTLAITIPCLEAGIGEFDDYLKVQSEEARQRALESYVPDPEAVTQELNFHVHLYAANSTLRRELRQKPKNNKVCEATNPIDTCWRCDKDWASNRFKLAECGKGFGRRATGGLGGPIYVVTDESDDDMENPRPGTLRYGVVLKGPVWIIFQRSMVITLKQELMVSSDKTIDGRGANVQIRDGAGITLQFVSNVIIHGIRIKNILSKEGGMIKDSYNHIGLRTRSDGDAISIFTASNLWIDHVSLSNCADGLIDVIQGSTAITISNCHMTKHNDVMLFGANDQHSEDKIMQITVAFNHFGQGLIQRMPRCRFGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYASPEVWKNWQWQSEMDLFMNGAKFTTSGAPIKISYNKGLIMKPRDGAHVSRLTRHAGALSCVVGRPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0179 443 PANTHER PECTATE LYASE 9 443 - -
Apr6g0179 443 SMART amb_all 169 366 IPR002022 -
Apr6g0179 443 SUPERFAMILY Pectin lyase-like 95 434 IPR011050 -
Apr6g0179 443 Pfam Pectate lyase, N terminus 31 81 IPR007524 GO:0030570
Apr6g0179 443 Pfam Pectate lyase 175 360 IPR002022 -
Apr6g0179 443 PANTHER PECTATE LYASE 18-RELATED 9 443 IPR045032 GO:0030570
Apr6g0179 443 Gene3D - 94 436 IPR012334 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Apr6g0179 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0179 Apr-Chr6 1751575 1753861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0179 14 443 Polysaccharide Lyase AT1G14420 55.481 1.25e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0179 K01728 - gmx:100785801 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0179 6 1751575 1753861 Apr1g0891 1 11975435 11978033 ECH
Apr6g0179 6 1751575 1753861 Apr6g0179 6 1751575 1753861 ECH
Apr7g1451 7 21632980 21635041 Apr6g0179 6 1751575 1753861 ECH
Apr3g0880 3 22883094 22885605 Apr6g0179 6 1751575 1753861 ECH