Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0175 ATGGGGTTTGGGAATAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTTAAAGGGAAGGAAGAAGGAGGGTAGTGCAGAGAAGGAGAGAAGAAGGTGGTTTAGATTCAATTTCTTTGGGAGCTGCATACCTTCAAGATCAAAAGTTGATAGCACCATAAGTGGCACTAGTGCCCATAATGGTGAAAATAATATCCTGAAGTCAGTGATAATTGAATCAGAGGGAAACAAATCTTCTTTTGAAAAAATCTCAAAGGAAACAGTTGCTCCTCCAGAATCCTCTATAACAACTAGTGAGGCAGAAAGTATCCCTTCCACACCGAAAGTCAGTGAGGAGTTGAAGGTTGCTTCTTGTTTGAGAAAATTCACATTCAATGGGCTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATCGAGGAGAACGGAACAGCACCTGTGAAACCAGGTACTGGGCTTACGGTTGCGGTCAAGACCCTCAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAATTAAATTATCTTGGTGATCTTGTCCATCCTAATCTTGTTAAATTGATTGGTTTCTGCATTGAAGATGACCAAAGGTTATTGGTTTATGAGTTTATGCCCCGAGGAAGTTTGGAGAACCACCTCTTTAGAAGGCCCCTACCTCTTCCTTGGTCTATCAGAATGAAAATTGCAGTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCGGAGGCCAATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCTAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAGGGAGAAAAGACACATGTATCAACAAGAGTTATGGGAACATATGGTTATGCTGCTCCAGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTTGTGCTACTGGAGTTGCTCACTGGCCGGCGATCAATTGACAAGAGAAGACCAAATGGAGAACACAATCTGGTAGAATGGGCAAGACCTGTACTTGGAGACCGGAGGATGTTCTACCGGATAATTGATCCCCGCCTTGAAGGTCACTTCTCAGTTAAAGGAGCACAGAAATCTGCACAGCTGGCCGCTCAATGCCTTAGCCGTGATCCAAAATCTAGACCTTTGATGAGCGAAGTTGTTCAAGCCTTAAAGCCTTTACCAAACCTCAAGGATATGGCTATCTCATCTTATCACTTCCAAGCAGCACGAGTAGATCGTACCATGTCCATGCCAAATCATAAAAATGTTATCAAAACACAGTTAGTTTCTGTGCCAAGGAAGGGTCAACCTATAAAAACCTTGACAAGTCCAAATTGTCCACATGGTTCTCCATATCTTCATTACAGAAAGTCTCCAAAACCAGTTAGGTAA 1467 0.4274 MGFGNNAVQAGSLDVDKLKGRKKEGSAEKERRRWFRFNFFGSCIPSRSKVDSTISGTSAHNGENNILKSVIIESEGNKSSFEKISKETVAPPESSITTSEAESIPSTPKVSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIAVGAAKGLAFLHEEARRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSIDKRRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGAQKSAQLAAQCLSRDPKSRPLMSEVVQALKPLPNLKDMAISSYHFQAARVDRTMSMPNHKNVIKTQLVSVPRKGQPIKTLTSPNCPHGSPYLHYRKSPKPVR* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0175 488 PANTHER OS01G0588500 PROTEIN-RELATED 65 480 - -
Apr6g0175 488 Gene3D Transferase(Phosphotransferase) domain 1 221 436 - -
Apr6g0175 488 Gene3D Phosphorylase Kinase; domain 1 119 220 - -
Apr6g0175 488 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Apr6g0175 488 MobiDBLite consensus disorder prediction 461 488 - -
Apr6g0175 488 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672|GO:0006468
Apr6g0175 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Apr6g0175 488 PANTHER RECEPTOR-LIKE KINASE PLANT 65 480 - -
Apr6g0175 488 MobiDBLite consensus disorder prediction 86 107 - -
Apr6g0175 488 CDD STKc_IRAK 141 418 - -
Apr6g0175 488 SUPERFAMILY Protein kinase-like (PK-like) 110 415 IPR011009 -
Apr6g0175 488 MobiDBLite consensus disorder prediction 90 106 - -
Apr6g0175 488 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0175 Apr-Chr6 1721755 1726881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0175 121 431 Glycoside Hydrolase AT3G07070 55.732 2.90e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr6g0175 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0175 - - gmx:100499647 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0175 6 1721755 1726881 Apr4g2417 4 33144339 33149177 PCT