Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0167 ATGACGCCAGGTGACATGTTTGCTCAAATAGGATCCATAGTTGCTTCCATAATGTTTGTTTGGGCTATGTTTAAGCAATTTTTCCCTCACCAACTAAGCCACCAAATTGAGAAATACTATCAAAGATTGGTGACTTTGATCTACCCTTATATCCAAATCACGTTCCATGAGTTCACAGGGGAGAGACTGATGCGAAGTGAGGCTTATTCAGCCATAGAGAACTACCTTAGCTCCAAGGCTTCTACACAAGCAAAGAGGCTCAAAGCTGACATAGGAAAGAACAACCAATCCCTTGTTCTTAGCATGGATGATCATGAAGAAGTAGCTGATGAGTTCAATGGTATCAAACTCTGGTGGGCTTCTGGCAAACACACTTCCAAATCACAATCACTTTCTTACCACCCGATGACTGATGAAAAAAGGTACTACAAACTCACTTTCCATAAAAGCAATAGAGACATGATCTTAGGAACATATTTGAATTTTGTACTTAAAGAGGGTAAGGCTATTAAGGTGAAAAACAGACAAAGGAAGCTTTATACTAATAGTGGGTCTTATTGGAGCCATGTAGTGTTTGAGCATCCAGCATCATTTCAAACACTTGCTATGGACCAAGATAAGAAGAAAATGATCATTGATGATCTCGTCACATTCAGCAATGCTGGAGAGTTCTATGGAAGAATTGGTAGGGCATGGAAAAGAGGTTATCTACTTTATGGACCCCCAGGAAGTGGCAAGTCCACTATGATTGCTGCCATGGCAAACTTGTTAGGCTATGATTTGTATGATCTTGAATTAACTGCGGTGAAGGACAACACTGAATTGAGGAAGCTTTTGATTGAAACATCTAGCAAGTCTATAATTGTGATTGAAGATATTGATTGTTCACTTGATTTGACTGGTCAAAGGAGGAAGAAAAAGGAAGAGGAAGAAGAGAAGGATCCTAAGGAAAAGCAATCAAGAATGCAAGAAAGAGATGCAAGAAATAGTCAGGTAACTCTTTCTGGTCTTCTGAATTTCATTGATGGGTTATGGTCTGCTTGTGGTGGAGAAAGACTTATAGTATTTACAACAAATTATGTGGAGAAACTTGACCCTGCATTGGTGAGGAAAGGGAGAATGGATAAGCACATAGAGTTGTCATATTGTGGTTTTGCGGCATTCAAAGTGTTGGCTAAGAATTATCTTAACATTGAATCACATTATTTATTTGGCACAATATGTGAGATGTTGAAGAAAACCAAAATCACCCCAGCTGAAGTGGCAGAGCATTTGATGCCTAAGACTGCTTCAAGGGATGCAGAATTTTATTTGAAAAGTTTGATTCAAGCACTTGAATTGGCACAAGAAGAAGCCAGGGTTAAATCTGAGGAAGATGCAAGAAAGATTGAAGCATCCTCTGAGCAAGATTCTCATTGGACTGAAAGTGATTCACCAGCCAAAGCAAACGGGAAATCAGAAAACTACACATAA 1473 0.3917 MTPGDMFAQIGSIVASIMFVWAMFKQFFPHQLSHQIEKYYQRLVTLIYPYIQITFHEFTGERLMRSEAYSAIENYLSSKASTQAKRLKADIGKNNQSLVLSMDDHEEVADEFNGIKLWWASGKHTSKSQSLSYHPMTDEKRYYKLTFHKSNRDMILGTYLNFVLKEGKAIKVKNRQRKLYTNSGSYWSHVVFEHPASFQTLAMDQDKKKMIIDDLVTFSNAGEFYGRIGRAWKRGYLLYGPPGSGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEEEEEKDPKEKQSRMQERDARNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALVRKGRMDKHIELSYCGFAAFKVLAKNYLNIESHYLFGTICEMLKKTKITPAEVAEHLMPKTASRDAEFYLKSLIQALELAQEEARVKSEEDARKIEASSEQDSHWTESDSPAKANGKSENYT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0167 490 MobiDBLite consensus disorder prediction 454 475 - -
Apr6g0167 490 SMART AAA_5 232 384 IPR003593 -
Apr6g0167 490 Coils Coil 438 458 - -
Apr6g0167 490 MobiDBLite consensus disorder prediction 302 328 - -
Apr6g0167 490 MobiDBLite consensus disorder prediction 454 490 - -
Apr6g0167 490 CDD AAA 233 382 - -
Apr6g0167 490 MobiDBLite consensus disorder prediction 302 325 - -
Apr6g0167 490 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Apr6g0167 490 Gene3D - 188 378 IPR027417 -
Apr6g0167 490 MobiDBLite consensus disorder prediction 476 490 - -
Apr6g0167 490 Pfam Domain associated at C-terminal with AAA 28 121 IPR025753 -
Apr6g0167 490 Pfam ATPase family associated with various cellular activities (AAA) 237 381 IPR003959 GO:0005524|GO:0016887
Apr6g0167 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 427 IPR027417 -
Apr6g0167 490 PANTHER BCS1 AAA-TYPE ATPASE 3 476 - -
Apr6g0167 490 Gene3D - 379 449 - -
Apr6g0167 490 PANTHER ATPASE, AAA-TYPE, CORE-RELATED 3 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0167 Apr-Chr6 1589505 1591290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0167 207 380 Calmodulin-binding Proteins AT3G56690 25.275 4.65e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0167 K08900 - gmx:100792143 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0167 6 1589505 1591290 Apr6g0167 6 1589505 1591290 ECH