Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0149 ATGAAGAGGGCAAGGGATGATGTTTACTCTGCCTCTGCCTCACAATTCAAACGCCCCTTTGGTTCTTCACGTGCTGATTCTTATGGCCAAAACCAAGTTCCTGGAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGTAGTGGTGGAGGCGGAGGTGGCAATGGAGGTGGTGGTAGTGGTGGAGGAGCAACTACTTCACAGAAACTGACTACGAATGATGCCTTGTCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAAGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTTAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAATACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGACGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATTAATTTCGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGTTGAGGTTTATAATGAGGTTGCTTCCCTTTTTAAGGACCATCAAGATTTGCTTGAGGAGTTCACTAGATTCCTGCCAGACACTTCTGCAGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCGCTGCAGCGCTTGAACGAGCGGAGTTCTATGGCACCAATGATGCGGCAAATGCAAGCAGACAAGCAACGCTATCGACGAGATAGACATCCTTCCCATGATCGTGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAAACAATGATGAACATGCACAAGGAGCAAAGGAAGCGTGAGAGTAGGGATCGGAGAATTCGTGACCAGGATGAGAGAGAAAATGATATTGATAACAGCAGGGATTTGAACTTGCAACGCTTTACTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCTGACTTTACATCTTATGATGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAACATTTTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATCTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGCTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCTACTGATGGTCATGTATCAAGATCCTCGAAGTTGGAGGAGAAAGACAGAGAGCACAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATATATGGGAAAATCCATTCAAGAACTTGACCTTAGTGATTGTAAACGCTGTACTCCCAGTTACCGGCTTCTTCCTGCAGATTATCCAATCCCTACAGCTAGTCAGAGATCTGAGCTTGGGGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGGAGTGAGGATTACTCTTTCAAACATATGCGTAGAAACCAGTATGAAGAAAGTTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTGGAGTCTGTGAGTTCTGCTGCCAAACGGGCAGAGGAATTATATAATAACATCAGTGAAAATAAAATCAATGTGGAGAGTCTGAATCGTATTGAAGATCACTTTACTGTTCTAAATTTAAGATGCATTGAGCGTCTATATGGTGATCATGGTCTTGATGTCATAGACATATTGCGTAAAAACCCAACTCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGGAGCTTCTATTTCAAACAGCAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGATGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAACTCCCCATCTGGAATTTGAATATTCTGATGCTGGGATTCATGAAGACTTGTATAAACTTGTTCGTTATTCATGTGAGGAGCTGTTTTCAAGTAAAGAGTTGATAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCGATGCTTGGTGTTCCTTCCCAATCTCATGGGGCAGAAAGGGTGGAGGATAGAAAAGCTGGGCATAATGCTCGCAGTTTTGCTGCACCAAATATAGGAGGTGATGGAAGCCCTCATGGAGACTCTCTTTCAATAAATTCAAGGTTACCAAAATCTGATAAGAATGAACTTGATGTTAGAGTAACTGAAGCGAAGAATGTTCACCGGACTAGTGTAACTGCCAGTGATAAAGAAAATGGATCTGTTGGAGGTGAACTTGTTTGCAGAGATGATCCATTAATGGAGAAAGGGCAGAAAAATGCAGAATGCAATGATAAAGGCTCTGGGTTTAGCAAACAATTTGCCTCTGATGAACAAGGGGCTAAAAGCAATTTATCAATTGCAATTAGAGGAGAAAGCAGTCTGAACAGAAATAACTTAGATGTATCTCCAGGCTGCGTCCTTACTCCATCACGACCTACTGATGCTGATGACTCTGTAGCCCAGTCTCAGGCTGGTAATGTACCTTTGGTGGAGGGGTGTGAGATGGTAGCTCCAGTACCATTGGCCAATGGCATTCTAAGTGAGAGCAGTAAAGTTAAAACCCATGACGAATCTGCTGGGCCTTGCAAAATTGAAAAAGAAGAGGGGGAATTATCACCAAATGGTGTCTCAGAGGAGGATAACTTTGTTGGCTATGGAGATTCAAATGTGCAGTCAGTGGCCAAGTCAAAGCACAATATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGCTGTCCAGAGGCTGGTGGTGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTTTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAAGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAGGGGATGTGTGATACACAAGCTGGTGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGATTTCTATGTTCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGAGTGCAGAAATGAAATGGAAAACAAAAGAAGCTAGTTCACCAGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCCGCTGAGAATGCAAAGTTTGAAGACGAATGCCGAGCAATTATTGGCAACAAGTCATATGTGTTGTTCACGTTGGACAAGTTAATATATAAATTGATCAGACAGCTTCAAACTGTTGCAACGGATGAGGTAGACAATAAGCTTCTACAATTATATGATTATGAAAAGTCTCGGAAGCCTGGGAAACTAAATGATTCTGTATATCATGCAAATGCTCATGTTATCCTTCATGAAGAGAACATTTATCGTTTGCAATGTTCCTGTACCCCCTCACAACTATCCATCCAGCTCATGGATAATATGAATGAAAAGCCTGAGTTATTTGCCGTTTCTATTGATCCAAATTTCTCTTTTTATCTGCACAATGACTTTCTGTCTGTTTTTCCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAACGGAAATATGGACAATTAGATGAGCTTTCTGCAGTATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAATTCATCCAAGATTTCTTATGTTCTTGACACCCAAGATTTTTTCTTCCGTCCAAGAAAGAAAAGACGAACATCATCAGCAACCACATCTTTGCAGTACCGTAGGGATAGAGAGGAAAGATTCCGCAGATTGTTGGCATGCCCATAA 4200 0.4083 MKRARDDVYSASASQFKRPFGSSRADSYGQNQVPGSGGGGGGGGGSGGGGGGNGGGGSGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAINFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIVEVYNEVASLFKDHQDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRLNERSSMAPMMRQMQADKQRYRRDRHPSHDRDMSAERPELDDDKTMMNMHKEQRKRESRDRRIRDQDERENDIDNSRDLNLQRFTDKKKSVKKAEGFGLASDFTSYDDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDGHVSRSSKLEEKDREHKREMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNISENKINVESLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLTPHLEFEYSDAGIHEDLYKLVRYSCEELFSSKELINKIMRLWSTFLEPMLGVPSQSHGAERVEDRKAGHNARSFAAPNIGGDGSPHGDSLSINSRLPKSDKNELDVRVTEAKNVHRTSVTASDKENGSVGGELVCRDDPLMEKGQKNAECNDKGSGFSKQFASDEQGAKSNLSIAIRGESSLNRNNLDVSPGCVLTPSRPTDADDSVAQSQAGNVPLVEGCEMVAPVPLANGILSESSKVKTHDESAGPCKIEKEEGELSPNGVSEEDNFVGYGDSNVQSVAKSKHNIERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGMCDTQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMSAEMKWKTKEASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNKSYVLFTLDKLIYKLIRQLQTVATDEVDNKLLQLYDYEKSRKPGKLNDSVYHANAHVILHEENIYRLQCSCTPSQLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILQRNKRKYGQLDELSAVCSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTSSATTSLQYRRDREERFRRLLACP* 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0149 1399 Coils Coil 556 576 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 762 844 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 945 968 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 852 871 - -
Apr6g0149 1399 ProSiteProfiles PAH domain profile. 350 419 IPR003822 GO:0006355
Apr6g0149 1399 Gene3D Paired amphipathic helix 348 421 IPR036600 GO:0006355
Apr6g0149 1399 ProSiteProfiles PAH domain profile. 66 136 IPR003822 GO:0006355
Apr6g0149 1399 MobiDBLite consensus disorder prediction 254 314 - -
Apr6g0149 1399 SMART hdac_interact2seq4b 483 583 IPR013194 -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 436 462 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 15 34 - -
Apr6g0149 1399 Pfam Paired amphipathic helix repeat 173 217 IPR003822 GO:0006355
Apr6g0149 1399 Pfam Paired amphipathic helix repeat 372 416 IPR003822 GO:0006355
Apr6g0149 1399 Pfam Paired amphipathic helix repeat 89 133 IPR003822 GO:0006355
Apr6g0149 1399 Gene3D Paired amphipathic helix 72 134 IPR036600 GO:0006355
Apr6g0149 1399 SUPERFAMILY PAH2 domain 147 219 IPR036600 GO:0006355
Apr6g0149 1399 Coils Coil 444 464 - -
Apr6g0149 1399 PANTHER SIN3B-RELATED 1 1387 IPR039774 GO:0003714
Apr6g0149 1399 MobiDBLite consensus disorder prediction 1011 1031 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 221 314 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 442 462 - -
Apr6g0149 1399 ProSiteProfiles PAH domain profile. 150 220 IPR003822 GO:0006355
Apr6g0149 1399 MobiDBLite consensus disorder prediction 1 66 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 221 247 - -
Apr6g0149 1399 Gene3D Paired amphipathic helix 149 221 IPR036600 GO:0006355
Apr6g0149 1399 MobiDBLite consensus disorder prediction 1047 1062 - -
Apr6g0149 1399 SUPERFAMILY PAH2 domain 64 135 IPR036600 GO:0006355
Apr6g0149 1399 MobiDBLite consensus disorder prediction 805 819 - -
Apr6g0149 1399 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1387 - -
Apr6g0149 1399 Pfam Sin3 family co-repressor 485 577 IPR013194 -
Apr6g0149 1399 Pfam C-terminal domain of Sin3a protein 1119 1366 IPR031693 -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 991 1010 - -
Apr6g0149 1399 MobiDBLite consensus disorder prediction 943 1082 - -
Apr6g0149 1399 SUPERFAMILY PAH2 domain 353 419 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0149 Apr-Chr6 1399848 1411092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0149 50 169 WRKY Transcription Factor Family AT4G12020 49.587 1.59e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr6g0149 Sin3a_C 7.6e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0149 K11644 - gmx:100807181 2416.34