Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr6g0149 | ATGAAGAGGGCAAGGGATGATGTTTACTCTGCCTCTGCCTCACAATTCAAACGCCCCTTTGGTTCTTCACGTGCTGATTCTTATGGCCAAAACCAAGTTCCTGGAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGTAGTGGTGGAGGCGGAGGTGGCAATGGAGGTGGTGGTAGTGGTGGAGGAGCAACTACTTCACAGAAACTGACTACGAATGATGCCTTGTCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAAGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTTAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAATACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGACGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATTAATTTCGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATTGTTGAGGTTTATAATGAGGTTGCTTCCCTTTTTAAGGACCATCAAGATTTGCTTGAGGAGTTCACTAGATTCCTGCCAGACACTTCTGCAGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCGCTGCAGCGCTTGAACGAGCGGAGTTCTATGGCACCAATGATGCGGCAAATGCAAGCAGACAAGCAACGCTATCGACGAGATAGACATCCTTCCCATGATCGTGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAAACAATGATGAACATGCACAAGGAGCAAAGGAAGCGTGAGAGTAGGGATCGGAGAATTCGTGACCAGGATGAGAGAGAAAATGATATTGATAACAGCAGGGATTTGAACTTGCAACGCTTTACTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCTGACTTTACATCTTATGATGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAACATTTTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATCTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGCTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCTACTGATGGTCATGTATCAAGATCCTCGAAGTTGGAGGAGAAAGACAGAGAGCACAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATATATGGGAAAATCCATTCAAGAACTTGACCTTAGTGATTGTAAACGCTGTACTCCCAGTTACCGGCTTCTTCCTGCAGATTATCCAATCCCTACAGCTAGTCAGAGATCTGAGCTTGGGGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGGAGTGAGGATTACTCTTTCAAACATATGCGTAGAAACCAGTATGAAGAAAGTTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTGGAGTCTGTGAGTTCTGCTGCCAAACGGGCAGAGGAATTATATAATAACATCAGTGAAAATAAAATCAATGTGGAGAGTCTGAATCGTATTGAAGATCACTTTACTGTTCTAAATTTAAGATGCATTGAGCGTCTATATGGTGATCATGGTCTTGATGTCATAGACATATTGCGTAAAAACCCAACTCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGGAGCTTCTATTTCAAACAGCAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGATGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAACTCCCCATCTGGAATTTGAATATTCTGATGCTGGGATTCATGAAGACTTGTATAAACTTGTTCGTTATTCATGTGAGGAGCTGTTTTCAAGTAAAGAGTTGATAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCGATGCTTGGTGTTCCTTCCCAATCTCATGGGGCAGAAAGGGTGGAGGATAGAAAAGCTGGGCATAATGCTCGCAGTTTTGCTGCACCAAATATAGGAGGTGATGGAAGCCCTCATGGAGACTCTCTTTCAATAAATTCAAGGTTACCAAAATCTGATAAGAATGAACTTGATGTTAGAGTAACTGAAGCGAAGAATGTTCACCGGACTAGTGTAACTGCCAGTGATAAAGAAAATGGATCTGTTGGAGGTGAACTTGTTTGCAGAGATGATCCATTAATGGAGAAAGGGCAGAAAAATGCAGAATGCAATGATAAAGGCTCTGGGTTTAGCAAACAATTTGCCTCTGATGAACAAGGGGCTAAAAGCAATTTATCAATTGCAATTAGAGGAGAAAGCAGTCTGAACAGAAATAACTTAGATGTATCTCCAGGCTGCGTCCTTACTCCATCACGACCTACTGATGCTGATGACTCTGTAGCCCAGTCTCAGGCTGGTAATGTACCTTTGGTGGAGGGGTGTGAGATGGTAGCTCCAGTACCATTGGCCAATGGCATTCTAAGTGAGAGCAGTAAAGTTAAAACCCATGACGAATCTGCTGGGCCTTGCAAAATTGAAAAAGAAGAGGGGGAATTATCACCAAATGGTGTCTCAGAGGAGGATAACTTTGTTGGCTATGGAGATTCAAATGTGCAGTCAGTGGCCAAGTCAAAGCACAATATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGCTGTCCAGAGGCTGGTGGTGATAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTTTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAAGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAGGGGATGTGTGATACACAAGCTGGTGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGATTTCTATGTTCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTCAATGAGTGCAGAAATGAAATGGAAAACAAAAGAAGCTAGTTCACCAGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCCGCTGAGAATGCAAAGTTTGAAGACGAATGCCGAGCAATTATTGGCAACAAGTCATATGTGTTGTTCACGTTGGACAAGTTAATATATAAATTGATCAGACAGCTTCAAACTGTTGCAACGGATGAGGTAGACAATAAGCTTCTACAATTATATGATTATGAAAAGTCTCGGAAGCCTGGGAAACTAAATGATTCTGTATATCATGCAAATGCTCATGTTATCCTTCATGAAGAGAACATTTATCGTTTGCAATGTTCCTGTACCCCCTCACAACTATCCATCCAGCTCATGGATAATATGAATGAAAAGCCTGAGTTATTTGCCGTTTCTATTGATCCAAATTTCTCTTTTTATCTGCACAATGACTTTCTGTCTGTTTTTCCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAACGGAAATATGGACAATTAGATGAGCTTTCTGCAGTATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAATTCATCCAAGATTTCTTATGTTCTTGACACCCAAGATTTTTTCTTCCGTCCAAGAAAGAAAAGACGAACATCATCAGCAACCACATCTTTGCAGTACCGTAGGGATAGAGAGGAAAGATTCCGCAGATTGTTGGCATGCCCATAA | 4200 | 0.4083 | MKRARDDVYSASASQFKRPFGSSRADSYGQNQVPGSGGGGGGGGGSGGGGGGNGGGGSGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAINFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIVEVYNEVASLFKDHQDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRLNERSSMAPMMRQMQADKQRYRRDRHPSHDRDMSAERPELDDDKTMMNMHKEQRKRESRDRRIRDQDERENDIDNSRDLNLQRFTDKKKSVKKAEGFGLASDFTSYDDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDGHVSRSSKLEEKDREHKREMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNISENKINVESLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLTPHLEFEYSDAGIHEDLYKLVRYSCEELFSSKELINKIMRLWSTFLEPMLGVPSQSHGAERVEDRKAGHNARSFAAPNIGGDGSPHGDSLSINSRLPKSDKNELDVRVTEAKNVHRTSVTASDKENGSVGGELVCRDDPLMEKGQKNAECNDKGSGFSKQFASDEQGAKSNLSIAIRGESSLNRNNLDVSPGCVLTPSRPTDADDSVAQSQAGNVPLVEGCEMVAPVPLANGILSESSKVKTHDESAGPCKIEKEEGELSPNGVSEEDNFVGYGDSNVQSVAKSKHNIERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGMCDTQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMSAEMKWKTKEASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNKSYVLFTLDKLIYKLIRQLQTVATDEVDNKLLQLYDYEKSRKPGKLNDSVYHANAHVILHEENIYRLQCSCTPSQLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILQRNKRKYGQLDELSAVCSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTSSATTSLQYRRDREERFRRLLACP* | 1400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr6g0149 | 1399 | Coils | Coil | 556 | 576 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 762 | 844 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 945 | 968 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 852 | 871 | - | - | |
Apr6g0149 | 1399 | ProSiteProfiles | PAH domain profile. | 350 | 419 | IPR003822 | GO:0006355 | |
Apr6g0149 | 1399 | Gene3D | Paired amphipathic helix | 348 | 421 | IPR036600 | GO:0006355 | |
Apr6g0149 | 1399 | ProSiteProfiles | PAH domain profile. | 66 | 136 | IPR003822 | GO:0006355 | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 254 | 314 | - | - | |
Apr6g0149 | 1399 | SMART | hdac_interact2seq4b | 483 | 583 | IPR013194 | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 436 | 462 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 15 | 34 | - | - | |
Apr6g0149 | 1399 | Pfam | Paired amphipathic helix repeat | 173 | 217 | IPR003822 | GO:0006355 | |
Apr6g0149 | 1399 | Pfam | Paired amphipathic helix repeat | 372 | 416 | IPR003822 | GO:0006355 | |
Apr6g0149 | 1399 | Pfam | Paired amphipathic helix repeat | 89 | 133 | IPR003822 | GO:0006355 | |
Apr6g0149 | 1399 | Gene3D | Paired amphipathic helix | 72 | 134 | IPR036600 | GO:0006355 | |
Apr6g0149 | 1399 | SUPERFAMILY | PAH2 domain | 147 | 219 | IPR036600 | GO:0006355 | |
Apr6g0149 | 1399 | Coils | Coil | 444 | 464 | - | - | |
Apr6g0149 | 1399 | PANTHER | SIN3B-RELATED | 1 | 1387 | IPR039774 | GO:0003714 | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 1011 | 1031 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 221 | 314 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 442 | 462 | - | - | |
Apr6g0149 | 1399 | ProSiteProfiles | PAH domain profile. | 150 | 220 | IPR003822 | GO:0006355 | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 221 | 247 | - | - | |
Apr6g0149 | 1399 | Gene3D | Paired amphipathic helix | 149 | 221 | IPR036600 | GO:0006355 | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 1047 | 1062 | - | - | |
Apr6g0149 | 1399 | SUPERFAMILY | PAH2 domain | 64 | 135 | IPR036600 | GO:0006355 | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 805 | 819 | - | - | |
Apr6g0149 | 1399 | PANTHER | PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 | 1 | 1387 | - | - | |
Apr6g0149 | 1399 | Pfam | Sin3 family co-repressor | 485 | 577 | IPR013194 | - | |
Apr6g0149 | 1399 | Pfam | C-terminal domain of Sin3a protein | 1119 | 1366 | IPR031693 | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 991 | 1010 | - | - | |
Apr6g0149 | 1399 | MobiDBLite | consensus disorder prediction | 943 | 1082 | - | - | |
Apr6g0149 | 1399 | SUPERFAMILY | PAH2 domain | 353 | 419 | IPR036600 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr6g0149 | Apr-Chr6 | 1399848 | 1411092 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr6g0149 | 50 | 169 | WRKY Transcription Factor Family | AT4G12020 | 49.587 | 1.59e-23 | 107 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Apr6g0149 | Sin3a_C | 7.6e-55 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr6g0149 | K11644 | - | gmx:100807181 | 2416.34 |