Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0134 ATGGAGATTCAACAAAGCGTGAAGGTCATGGTCCACAAGAAATGGCCATCACACAAAGGAGCAAAAGAATCAGAACCAATAATAAGCACTCCGAAGCCGAAATGGAAGAAGATCTTCTTCCACACCAAAACCAAAACCAAAACCAAAACCCAAACTCAAAACCAAAACCAACCTGAAGAGTTCCTCTGCCCCATTGCAGGTACACTCATGGCAGACCCAGTCATTGTCTCTTCAGGCCATTCCTTCGAACGTTCTTCCGTGGAAGCATGTAAAAATCTCAACTTTACCCCTCAACTCTCCGATGGCACCACCCCAGATTTCTCCACCGTAATCCCCAACCTCGCCCTCAAATCCGCCATAGTCAAATGGTGCAAAACCACCTCAACACCCCCACCCCACCATTCCTCCAACCCCAACCTCGTACGCACCTTAATCTCCTCGAACCCAACCCTACAAAACAGCAACCCCGTCACAGACAAAGACTTAATTCGAGGAGTTAACAAAAACCCAAAACCCAACCTTCTCCACCACGCGCAAACTGAAGTCCCTCGTAGACCCACGCACTTGTACACTAGCTCCGAGGAATCCATAGCCACAACCTCAGCCTCAACCCCACCTCTTCAGCTCTCCACGCGTCCCAGTTGCTGCTACTCTTCACCTTCCTCTTCAGAAATCGAAACCGCCACAACCCCAGAAGAAGAAGAGATCATGGCCAAACTAAAAAACCCTCAAGTTTTCGTGATCGAAGAAGCACTCGTTTCGCTCAGAAAGCTGACGAGAACGAGAGAAGAAACAAGGGTTCAACTCTGCACCACTCGGTTACTCTCTGCTCTACGTTCCCTCGTTGTTTCAAAATACACCAACGTTCAGGTCAACGCTCTTGCCTCTGTGGTCAACCTTTCGTTGGAGAAGAACAACAAAGTGAAGATCGTGCGGTCAGGGATCGTTCCACCGTTGATCGAGGTTTTGAAGTTTGGATCCTCTGAGGCGCAGGAACACGCTTCTGGTGCACTCTTCAGTTTGGCACTTGAAGATGATAACAAAACCGCAATTGGGGTTTTGGGTGCTCTTTCGCCGTTGCTTAACACGCTCCGATCCGAGAGCGAGCGAACTCGGCATGACTCGGCTTTGGCGCTTTATCATCTTTCTTTGGTGCAGAGTAACCGGGCCAAGATGGTTAAACTCGGGTCGGTTCCGGTTCTTTTAAATATGGTCAAATCGGGTCATATGATGGGTCGAGTTCTTTTGATTCTGGGCAACTTGGGTTCCGGGTCGGAAGGGCGGGCTGCGATGTTGGATGCGGGTGCGGTGGAGTGTTTGGTGGGGCTGTTGGGTGGGACCGAGTTGGGGACCAGGTCGACTCGGGATAGTTGCGTGGCGGTTTTGTACGCGCTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGCGGCGGGGGCGGTGGAGGTTCTGCAAAAGGTGGAGAAAGTAGGGAGTGAGAGGGGTAAGCATAAAGTGAGGAAGATATTGGAGATTATGAGGGCTAAGGAGGTGGAGGAAGAGGATGTGGACTGGGAAGAGTTGCTTGACTCGGGGCTGGGTTGTCGAACTCGGACTCGACTCGGGAGTGGGTTCGACGAGTCAAGTGCTAACTCGGCCGAGTTTTGA 1650 0.5139 MEIQQSVKVMVHKKWPSHKGAKESEPIISTPKPKWKKIFFHTKTKTKTKTQTQNQNQPEEFLCPIAGTLMADPVIVSSGHSFERSSVEACKNLNFTPQLSDGTTPDFSTVIPNLALKSAIVKWCKTTSTPPPHHSSNPNLVRTLISSNPTLQNSNPVTDKDLIRGVNKNPKPNLLHHAQTEVPRRPTHLYTSSEESIATTSASTPPLQLSTRPSCCYSSPSSSEIETATTPEEEEIMAKLKNPQVFVIEEALVSLRKLTRTREETRVQLCTTRLLSALRSLVVSKYTNVQVNALASVVNLSLEKNNKVKIVRSGIVPPLIEVLKFGSSEAQEHASGALFSLALEDDNKTAIGVLGALSPLLNTLRSESERTRHDSALALYHLSLVQSNRAKMVKLGSVPVLLNMVKSGHMMGRVLLILGNLGSGSEGRAAMLDAGAVECLVGLLGGTELGTRSTRDSCVAVLYALSHGGLRFKAVAKAAGAVEVLQKVEKVGSERGKHKVRKILEIMRAKEVEEEDVDWEELLDSGLGCRTRTRLGSGFDESSANSAEF* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0134 549 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Apr6g0134 549 Pfam U-box domain 58 127 IPR003613 GO:0004842|GO:0016567
Apr6g0134 549 MobiDBLite consensus disorder prediction 186 227 - -
Apr6g0134 549 SUPERFAMILY ARM repeat 235 486 IPR016024 -
Apr6g0134 549 SUPERFAMILY RING/U-box 54 129 - -
Apr6g0134 549 PANTHER U BOX DOMAIN-CONTAINING 33 538 - -
Apr6g0134 549 SMART arm_5 303 343 IPR000225 GO:0005515
Apr6g0134 549 SMART arm_5 424 467 IPR000225 GO:0005515
Apr6g0134 549 SMART arm_5 344 384 IPR000225 GO:0005515
Apr6g0134 549 MobiDBLite consensus disorder prediction 146 174 - -
Apr6g0134 549 MobiDBLite consensus disorder prediction 186 231 - -
Apr6g0134 549 Pfam Armadillo/beta-catenin-like repeat 306 342 IPR000225 GO:0005515
Apr6g0134 549 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 33 538 - -
Apr6g0134 549 Gene3D - 228 506 IPR011989 -
Apr6g0134 549 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 351 IPR000225 GO:0005515
Apr6g0134 549 MobiDBLite consensus disorder prediction 146 160 - -
Apr6g0134 549 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Apr6g0134 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0134 Apr-Chr6 1254755 1257125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0134 1 549 U-box Gene Family AT5G40140 53.901 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0134 - - gmx:100798675 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0134 6 1254755 1257125 Apr6g0134 6 1254755 1257125 ECH
Apr6g0134 6 1254755 1257125 Apr4g2407 4 33033616 33037787 PCT