Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0116 ATGGCAATGTCGCAAGGGTTCGCAATCGAGCTATACTTGGATCCAGCGTTGGAGAATCAGGTTCTGAAGGCATGGAACGTCATGGCTCGGAGACAAATAAGCACTCAACTAATCGAAATAGAGTCTCGTCCTCACATCACACTCTTCTCTTCTCCGTTTCTAGAACCTTCCAAACTAGAATCCATCGTCAAAACCTTCGCCTCCAAACACGACCCTTTCCCTCTCTCTTTCTCTTCCATTGGCACTTTCTGCAACGACAACAACGTTCTCTTTCTCGCCCCCACCCCTTCCCTTTCACTCCTTCAGTTCCAGTCTCTGCTCTGCGACGCTATCAAGAAAGAAGGCGTTGAGGTTTCTGATGATTACGCCTTCAATTCTTGGATTCCCTATTGCTCCGTTGCCGACCAGGTTCCCAAAGCAAGGATGCCTGAAGCTTTCTCCGTCTTGCGAGACCTCAAATTGCCCGTTTCCGGTTACGCCATTGATATTGGACTCGTTGAGTTCTCTCCGGTTCGAGAACTCTTCTCCTTCGTTCTTGGCAACACTGTTGACTCATGA 558 0.4875 MAMSQGFAIELYLDPALENQVLKAWNVMARRQISTQLIEIESRPHITLFSSPFLEPSKLESIVKTFASKHDPFPLSFSSIGTFCNDNNVLFLAPTPSLSLLQFQSLLCDAIKKEGVEVSDDYAFNSWIPYCSVADQVPKARMPEAFSVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVDS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0116 185 PANTHER - 3 183 - -
Apr6g0116 185 Pfam 2'-5' RNA ligase superfamily 43 157 - -
Apr6g0116 185 SUPERFAMILY LigT-like 8 153 IPR009097 -
Apr6g0116 185 Gene3D Cyclic phosphodiesterase 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0116 Apr-Chr6 1130503 1131240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0116 3 185 Calmodulin-binding Proteins AT5G40190 68.852 1.11e-88 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0116 - - pvu:PHAVU_004G019100g 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0116 6 1130503 1131240 Apr6g0116 6 1130503 1131240 ECH