Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0110 ATGATCTGTGAGATGTCAGAAAACATGTTTCCTAGGTTGTTTTTTGACCATACCCATTTGAAGATGGCTTGGATTGAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACCCACCCCCGGGTTTGTCTTCATCATCTTCATACCCTGGTGCTGCTTTCCACAAGGAATCCATGCCCTCTTCAACACCTTCACCATCTGGAACTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATTTCTGGTCTACTCCATCTGCTTGTTAGATTTCTGATAAAGCATCCATCTTCTGCTTCTGCTCAATCCAATAGACACCCAGAAATTTCCACTTCTGATGCTCTTCAAAGACAGCTGCAACAGCTCTTCCATCTCCATGATTCTGGTTTGGATCAAGCTTTCATTGATGCACTCCCTGTTTTTCAGTACAAGGAGATTGTGGGTCTGAAAGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCTGAGAAAGATAAGCTAAGGTTGTTGCCTATGTGCAGCCATGCTTTTCACATCAGTTGTATTGACACATGGCTGTTGTCAAACTCCACGTGCCCTCTTTGTAGAGGAACCCTCCTCACTCCTGGATTTTCTATTGAAAACCCAATATTTGATTTTGATGATCTGAGGGAGGATGATGGGTGTCCTTGTAATGTGGAAAATGGATTCACTACAAGACAGAAAACTGTTGTTGTTGAAGAAACTGTAGACAAAGGTGTTTTCCCTGTGAGACTTGGTAAATTCAAGAAGCTGAATGTCGAGGGTGGGGACAATGGAGTGGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGATCTTACCAGTATGTGGTTGGAAATTCAGACCTCAGGGTGGCGTTGAACCATGACCATAAAGGTCAAGTTACAAGCCTCACCAAAGGAACAGAACATGGTGATGATAAGCTTTCAGTGGTGGGGGATATGGAAGCAAAGAAGATTAGTAGTGTCACTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGAAAATTACCTAGTTCTTTGGATGCTCAAATAGGCATGCCATCTTATCTTAATACAGGTTTGCAAGGGATGAGGGAAAGAGAAGGGGCATGA 1176 0.4277 MICEMSENMFPRLFFDHTHLKMAWIEHQIQQKDGYLSYPPPGLSSSSSYPGAAFHKESMPSSTPSPSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSIENPIFDFDDLREDDGCPCNVENGFTTRQKTVVVEETVDKGVFPVRLGKFKKLNVEGGDNGVVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHDHKGQVTSLTKGTEHGDDKLSVVGDMEAKKISSVTKGDSFSVSKIWLWPKKGKLPSSLDAQIGMPSYLNTGLQGMREREGA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0110 391 Pfam Ring finger domain 161 204 IPR001841 -
Apr6g0110 391 SUPERFAMILY RING/U-box 141 210 - -
Apr6g0110 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
Apr6g0110 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 376 - -
Apr6g0110 391 CDD RING-H2_PA-TM-RING 161 204 - -
Apr6g0110 391 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Apr6g0110 391 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE ISOFORM X1 14 376 - -
Apr6g0110 391 SMART ring_2 162 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0110 Apr-Chr6 1081503 1083774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0110 68 363 C3H Transcription Factor Family AT2G18650 43.465 6.80e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0110 - - gmx:100806337 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0110 6 1081503 1083774 Apr6g0110 6 1081503 1083774 ECH
Apr4g1756 4 23093860 23095080 Apr6g0110 6 1081503 1083774 ECH