Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0103 ATGATTGAGAGGGGTACAAATGGTGGCAAAAGCATGTCCATAACTGACTTGGAGAAGCTTCCATGCTATGATTATGTTGCCAAAGACAATACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCATTACAGGTGATAAGTGCAGACTGTTACCTATGTGCAAGCACAGTTTTCATGCTCGAAGTGTGGACACATGGCTTCTAAAGACGCCCATTTGTCCAATTTGCCGGTCTAATGCTGCTTCTCATAGTGAAGACCAAGTTATAGGTATCAGTGAGTACTTTATTGAACCAATCAGCGGGTCTAGGGAGAGCCTAGAAAGAGGTCCATCCAGGAATGTTGACATAGAATTGATACAAAATCCAACCTTAAGGCTGAGCTAA 390 0.4359 MIERGTNGGKSMSITDLEKLPCYDYVAKDNTSSPVDCAVCLENLITGDKCRLLPMCKHSFHARSVDTWLLKTPICPICRSNAASHSEDQVIGISEYFIEPISGSRESLERGPSRNVDIELIQNPTLRLS* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0103 129 SMART ring_2 37 78 IPR001841 -
Apr6g0103 129 Pfam Ring finger domain 36 79 IPR001841 -
Apr6g0103 129 SUPERFAMILY RING/U-box 26 85 - -
Apr6g0103 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 89 IPR013083 -
Apr6g0103 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 91 - -
Apr6g0103 129 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
Apr6g0103 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0103 Apr-Chr6 1030402 1030791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0103 17 84 C3H Transcription Factor Family AT2G18650 47.826 2.26e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0103 - K15692 aprc:113867591 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0103 6 1030402 1030791 Apr6g0103 6 1030402 1030791 ECH