Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0102 ATGATCATGGAACTCACCGATTCCACTGCCGGCGACCGCAACCTCAACGCGCCGCCGCACCACCAAGACTCTCGGTCGGGCCTCGGAATCGACCTCAACGAGATCCCTTCCCCTCCCTCTTCCTTCGTCGAAACCCTACCGGACTCCGCCGTCGACATCGTCCGCGCCTACCATGAGAACCCCGCGCCTCCGCCCGGCGGCCCCGCCGCCCTCCCCCGAGCCCTCGCTCCATGCGCCGCCTGCGCCAAGCCAGAGACTCGCGCCTCTACCGGGAGCCACCACCTCGTCGTCTGCGACGCCTGCGAGCGCGGCTTTCACTTGGCATGCGCCGGGATTCGCGGCGGCGGCCGCCAGGCGCCTAGCTTCGACGAGTGGGTCTGCGGCGAGTGCGTGTCCGGGGGAGTGAAGAGTAAACGGTGGCCGTTGGGAGTTAAGTCCAAGCAGCTTCTTGATATCAACGCTTCGCCGCCCAGCGACGCCGACGGAGATGGCAGCGGCGAGGAGTCGCAGGATTTGAGAAAGCACCCTCTGGGTGATAATTCTTTTGGTGCCAATCCCTTTGGTGCCCCAGTGACGCATTCAAACTTCTACAACGGGAGTGCTCTTGGCTTTCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGCGGGTTTTGAGGATATATTGAATCATACCCAATCAATGACTAGAAGCTTTGAGAAGGCATATATGGATTTCCCTCTTGGAATTCATAGCAGTAGTAATAATACAGCTAATAGAATGCCATCTCGGAGTTCAAATGAGATGTTTTTGCAGGCTCTTAAAGATTTTATATCTCAAAGGCATGGTGTACTAGAGGAAGGTTGGCGGGTGGAATTAAGACAATCCACAAGCAGCTCTCAACTGTATGCAGTTTATTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGGTAGGATCTGGCTACAATTCTAGGGAATCTGAAATAAGAAATGAGAGGTCCAGGAAAAGAAAGTCTACAAGAACTCCAGTAGCCAATGGCTTTGCAGAAAAGCGGGGAACCTTGATCAATAGTAATTGTAAGGATCCTCCTTCTGATGGTTTAAATGTGGAATGTGCTAGTGCTAGGGGGAATATCTCAAATACCTCTGAAATTGGAAGAAAAGAAGATGGCCAGTCATGCCCTCAGCAATCTGCTGATGGACTTCCTCTACAGTTCAAGGATTTCTTTGTTCTTTCTTTGGGAAAAATTGATGGAAGACCTTTATATTATGATGTTAACCTTATCTTTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGCGGTGATTCTGGACCTATATTTAGGATCAGAAGGTGTTCCTGTTCAGAATTTCCTGTTCCAGTTGGCTCAACTATCCTCTCAATTTCATGTCTTCGTCAATTTGTGAGTCAAACCAATGAAGGTGAAAAAAAGACTAATGATAGTGTGGATTTGGAAGGTGATGAAAGTATCCAGATGCTGCTTTTAGAACCTTGTGTGCCAACAGAAGATGACGTCTTAAGTTGCTTTGCAAGCTGCTCGAATGAAGCATGTGATATACTGCCTGTTACTGCTTCAGTTCATGATAATACTAGAAATTCATTAGCTGATAACATAGGGTTTATTGATGAAATTGGTGAAATTTTAGTAGAAGAGCGGTCATCATTCTCTGCATGGAGTGTTATTTCTCAAAAGTTAGTTAATGCTTGCAAAGATGTTTGCAAACAGAAAGGATCTCTCAAGTTCTATTGTAAACATGTTGAAAATGAAGCATGCTTACGTAACTGGGATTTAAGGAATGGAAAAAGTGATACACACCTTACTTCATTGGATAAATTTTGTGGTTCACTTGGTTCAGTTGGCATTCCTGATGTAATTTATGCAGAAAATGACCTGAAAGGGCTCTACGAGGTATTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGTGTCGAAGACACTTTGCAATATGAGCTTCTACATAGTAGAAATAATAGCTCTTCATTGCCAACAGTAGAAAATGGTTTCTTAAGTGTTGAATGTAATAGAGATGGATCAAAAAGTCAGGAAGCAGTTCAAGGTTTATATAGGGGGCCCAATAAGGCGAGGTTGACTGAAAAACAAAAGGAAGATCGTTGTCCACCTCCTGGGAAGTCACTATGCTCTAGGGCTCCTACTGAGCTTGTTGGTGACATTTTCCAGGCTTGGGAGCTTTTAGAGCGATTTCATGAAATTCTCGACCTGAAAGATCTATTGTCATTAGATGAGCTTGAAAAGGAACTTATCAACCCTTGGTTTGATGTGCTGGATGTTCCTGAGAAATCTGATGGGGAAATGGAGGGCAATCAAGTTTTAAGTTCCCAAGGAGCTGATGGTGATTGCGGACTAATATTGTCCCCAAGATGTGAAGCTGGTCCATCAGGTTCTGTAGAAAGTTCTCATGCATTTATACAAGTGGAAACAGAAGCAATGAAAGAGGCAGCTCAGGTTAAGCTTGCATCTTTCACTTATGCCAGATGCTTCGGTCAAGCTTTGACCAAGGCTCATAATTCATTGCTAAAAGTGTTAATAGGTGAATTACTATCAAAAGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACACGACGGGGAAGAAGGAAAGATATAGATAGTGCAGTTCCTGCTAAACGAAACAAGCTCAATATGCTTCCTATTAATGAACTCACTTGGCCAGAATTAGCTCGTAGATATATCTTGGCTTTCTTATCGATGGATGGTAACCTTGAGTCTGCAGAAATTACTGCTCGGGAAAGTGGTAAAGTATTTCGTTGCTTACGGGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACTGTTGCTTGCGGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCCTAGAACATGACGTATTATCCATGGAAGAAGAGGAGTCTGATGCCAAGGGTGCTTCTGAAAAAAGTTTGGTGAATGACAGCAACATTCCTGAATGGGCACAGATGTTAGAACCTGTCAGAAAGCTGCCAACAAATGTAGGCACCCGAATCAGAAAGTGTGTTTACGATGCTTTGGCCAAGGATCCACCAGAATGGGCAAGGAAAATTCTGGAGCATTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTAGCTGATGTAGTTGGTGAAGGATTGCAACTGAATCCCAGTAAAGGAAGGAAAAAGAAGATTGATATATCAATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGTTCTCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGTACTATTGACCTAAGATTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGTGAGTTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTGGAACTGGCTGAGAAATTATCCCAAAACTTTGAATCATTGTACAATGAGGAGGTCGTTACCTATGTTCAAAAGTTTGTGGAGTATGCTAAACTGGAAAGCTTAAGTGTAGAGATGAGAAAGGAAGTCAACAATTTTATTGCATCAACAAATGAGATTCCAAAGGCACCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCAGAGTATCATACATATTGCTTGAATCCTCCTCTTGCAAGGATCCCTGAAGGAAACTGGTATTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCCAGATGTTACAGAGCATACACAGATTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGAGAAGTTGATTCTCTTTACTTGGAAGCTCTAACTCATTTATCAGCTGTAATTGAAGAAAAAGAATATTGGGAGTACAGCATGGGCGAGAGAACTTTCCTTCTCAAGTTTTTGTGTGATGAGTTGCTTAATTCTTCCCTGATACGCCAGCACCTTGAGCAATGTTCAGAGTTGTCTGTTGAGTTGCATCAAAAGTTGCGTGCACTTTCTGGAGAGTGGAAAGGCCTGAAAAATAGAGAGGATATTTTATCCACAAAAGCTGCAAAAATTGATACATTCTCACTTAATACTGCTGGAGAAGTTGGTCTTAAAGAGGGGTTCACAACTTTATTATCAAATACTGGTAAATGTCTGGTTCAGCCACACACTGCAGATTACAATCCTAATAACTTTGGGGTATTTGTTGATAGTCTTCCTTCAGAGGAGATTACCAAAGAGAAGTACAGGTTGGATAGTGTTGATAAAAGCATGTCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCTATGGACGTAGAGGGACAATTTAGAAATGTTTCTGTGGCTGTGGAGTCTCAGTGTACTGATAAATCCCCCAAGTCTGTTCCATCACCAAATCATATGCCTCAAGAAATAAATGGTTCTGGTGGAGCAGCTCATATCCATAGTAACCACCAGAAATGTGAGGGAAGGGACATATCTACTCCTGTGATGCACCAGCAAGGACAATGTGTGCCTGTCGATGTTCCTCAGATTACTGTGAATGAGTCAGAACCCATCCACCTCGAGCTCAATGCCATCAAGCGTGATATTTCACTACTGCAGGACTCCATAACAAATGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGTCGGGAATTTTTGGGTATTGATTCTATAGGTCGACTGTACTGGGCTTCAGTTATGGCCCGGGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCATGGATGCACGGAAGAGGAATGGCTTTTAGCAGAGACTCTGTAGAGAGGTTTACTTCTCTGCTGCATTGTACTCCATCTGAGAAGGATTCCTCTCCTTTTATGTCTCAACCAAGTAGTGCTTTGAGCAAGAGTTCACCATGGGTTGCATATGAAACTGATGCAGAAATTGAAGAACTTCTAGGTTGGCTGGACGATAATGACCCTAAAGAGAAAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTTCAAGAGTTTATTAATGCACAGACTGAAAGTCAGGTTGAGGACCAAGGACCTGTTTCTATGCTAAGAAATAGAGAGAAATCAGTATCTAATTCTCTTGTTACGAAGGCAACTTCCTTGCTGGAAAAAAAATATGGTCCATTATTTGAGTGGGATACAGTTGAGGTGTTGAAGAAGCAAAGTAACAGAGCCAGAACAACTAATGATGAAAAATTGTATAGATGTGAGTGCCTGGAAGCCGTATGGCCTTCTAGGAAACACTGCATGTATTGTCACAAAACTGTTACAAGTGATGCTGAATTTGAGGAACACAATGATGGCAAATGTAACGCAGGTCTTCTGGTCTTGGAGAAGAACAAGGACAAAAATGGATCTTCTAAAGGAAGAGGGAACTTAAAATGTGATACTTCACATGAGAAATTCAGAGCTGATGGAGAAATAGCTGGAACCTCAATTAATGGATGTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGTCCATTTAATTTTGAAGATATATGTTCCAAGTTTGTGACAGATGATTCCAACAAGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCAGATGGTATCCCATCTTTTGTTCCTTCCATTTCTCCTTTTGTTAGTGAATATACACTATTCTCAGCTCAAAAGGATGATAGTGTCGTTGGGGGTGTTTCCAAAGCATCAGAAAGCCAGGTTCCTCAGGGAAACACTGATGGAGCTGGCACATGTCATGATTGTAAATCAGGTGTATCTGCTGCAAGGGTAGCTACAAATGAAAGCAATAAATCCAACAAATCATCCTTGGGAGAACAAAGAGATGGAAAATTATCTTTTTGTAGTCCTTCTTTGGACATGGGAGTTGATGGCTGCTGCGTGGTTCCTTTGTCTTCGTTGAGACCATTAGTTGGAAAAGTTTCTCATATTTTGAGGCAACTGAAGATTAATCTACTTGATATGGATGCTGCACTCCCGACAATTGCTCTAAGACCATCAAAGGTCCATTCTGATAGAAGACAAGCTTGGCGTGCATTTGTTAAATCTGCAGAGACCATATATGAGATGGTTCAGGCAACGATTACACTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTACCTTCCCTTGCCCTTCGCATATACTCCCTTGATTTAGCCATTATATATGAGAAAATGCCCAATTCAAGTTTTACTGACAACTCTGATCCTTCTGCCATAGTGGAACAGAAACCACTGATGACTGTGGATTCAGAGAAATCCAGAGCGAGCCGGAAATCAAACAGGAAAAGGAAGGAACCAGATAATTGA 6678 0.4274 MIMELTDSTAGDRNLNAPPHHQDSRSGLGIDLNEIPSPPSSFVETLPDSAVDIVRAYHENPAPPPGGPAALPRALAPCAACAKPETRASTGSHHLVVCDACERGFHLACAGIRGGGRQAPSFDEWVCGECVSGGVKSKRWPLGVKSKQLLDINASPPSDADGDGSGEESQDLRKHPLGDNSFGANPFGAPVTHSNFYNGSALGFQKASGVVTHAVRAGFEDILNHTQSMTRSFEKAYMDFPLGIHSSSNNTANRMPSRSSNEMFLQALKDFISQRHGVLEEGWRVELRQSTSSSQLYAVYCAPDGKIFDSVYEVACYLGVGSGYNSRESEIRNERSRKRKSTRTPVANGFAEKRGTLINSNCKDPPSDGLNVECASARGNISNTSEIGRKEDGQSCPQQSADGLPLQFKDFFVLSLGKIDGRPLYYDVNLIFPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSISCLRQFVSQTNEGEKKTNDSVDLEGDESIQMLLLEPCVPTEDDVLSCFASCSNEACDILPVTASVHDNTRNSLADNIGFIDEIGEILVEERSSFSAWSVISQKLVNACKDVCKQKGSLKFYCKHVENEACLRNWDLRNGKSDTHLTSLDKFCGSLGSVGIPDVIYAENDLKGLYEVLGKWLEQDRFGLDVEFVQEVLEQLPGVEDTLQYELLHSRNNSSSLPTVENGFLSVECNRDGSKSQEAVQGLYRGPNKARLTEKQKEDRCPPPGKSLCSRAPTELVGDIFQAWELLERFHEILDLKDLLSLDELEKELINPWFDVLDVPEKSDGEMEGNQVLSSQGADGDCGLILSPRCEAGPSGSVESSHAFIQVETEAMKEAAQVKLASFTYARCFGQALTKAHNSLLKVLIGELLSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRNKLNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSLEHDVLSMEEEESDAKGASEKSLVNDSNIPEWAQMLEPVRKLPTNVGTRIRKCVYDALAKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLADVVGEGLQLNPSKGRKKKIDISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSQNFESLYNEEVVTYVQKFVEYAKLESLSVEMRKEVNNFIASTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATPDVTEHTQIIGKRRSKKFQGEVDSLYLEALTHLSAVIEEKEYWEYSMGERTFLLKFLCDELLNSSLIRQHLEQCSELSVELHQKLRALSGEWKGLKNREDILSTKAAKIDTFSLNTAGEVGLKEGFTTLLSNTGKCLVQPHTADYNPNNFGVFVDSLPSEEITKEKYRLDSVDKSMSVTNSDSDSQNMNSMDVEGQFRNVSVAVESQCTDKSPKSVPSPNHMPQEINGSGGAAHIHSNHQKCEGRDISTPVMHQQGQCVPVDVPQITVNESEPIHLELNAIKRDISLLQDSITNVVSQLLKLSVRREFLGIDSIGRLYWASVMARGRSRIVVDASAAWMHGRGMAFSRDSVERFTSLLHCTPSEKDSSPFMSQPSSALSKSSPWVAYETDAEIEELLGWLDDNDPKEKELKDSIMLGPKSRFQEFINAQTESQVEDQGPVSMLRNREKSVSNSLVTKATSLLEKKYGPLFEWDTVEVLKKQSNRARTTNDEKLYRCECLEAVWPSRKHCMYCHKTVTSDAEFEEHNDGKCNAGLLVLEKNKDKNGSSKGRGNLKCDTSHEKFRADGEIAGTSINGCSKLSSRLIKFSNEESTCPFNFEDICSKFVTDDSNKELVKEIGLIGSDGIPSFVPSISPFVSEYTLFSAQKDDSVVGGVSKASESQVPQGNTDGAGTCHDCKSGVSAARVATNESNKSNKSSLGEQRDGKLSFCSPSLDMGVDGCCVVPLSSLRPLVGKVSHILRQLKINLLDMDAALPTIALRPSKVHSDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKMPNSSFTDNSDPSAIVEQKPLMTVDSEKSRASRKSNRKRKEPDN* 2226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0102 2225 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 24 2224 - -
Apr6g0102 2225 Pfam Methyl-CpG binding domain 270 323 IPR001739 GO:0003677
Apr6g0102 2225 SUPERFAMILY FYVE/PHD zinc finger 1278 1342 IPR011011 -
Apr6g0102 2225 Gene3D - 245 356 - -
Apr6g0102 2225 CDD PHD_SF 78 130 - -
Apr6g0102 2225 SMART PHD_3 77 131 IPR001965 -
Apr6g0102 2225 SMART PHD_3 1292 1338 IPR001965 -
Apr6g0102 2225 Gene3D - 1134 1256 IPR036427 GO:0005515
Apr6g0102 2225 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1372 1416 IPR028942 -
Apr6g0102 2225 CDD PHD1_Lid2p_like 1292 1337 - -
Apr6g0102 2225 ProSitePatterns Zinc finger PHD-type signature. 78 130 IPR019786 -
Apr6g0102 2225 ProSitePatterns Zinc finger PHD-type signature. 1293 1337 IPR019786 -
Apr6g0102 2225 PANTHER OS02G0192300 PROTEIN 24 2224 - -
Apr6g0102 2225 SUPERFAMILY FYVE/PHD zinc finger 76 141 IPR011011 -
Apr6g0102 2225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 134 IPR013083 -
Apr6g0102 2225 MobiDBLite consensus disorder prediction 1 40 - -
Apr6g0102 2225 MobiDBLite consensus disorder prediction 2204 2225 - -
Apr6g0102 2225 SUPERFAMILY Bromodomain 1128 1247 IPR036427 GO:0005515
Apr6g0102 2225 SUPERFAMILY DNA-binding domain 272 325 IPR016177 GO:0003677
Apr6g0102 2225 MobiDBLite consensus disorder prediction 151 184 - -
Apr6g0102 2225 Gene3D - 404 516 - -
Apr6g0102 2225 ProSiteProfiles FYR domain FYRN motif profile. 403 456 IPR003888 GO:0005634
Apr6g0102 2225 Pfam Bromodomain 1181 1236 IPR001487 GO:0005515
Apr6g0102 2225 ProSiteProfiles Zinc finger PHD-type profile. 75 133 IPR019787 -
Apr6g0102 2225 Pfam PHD-finger 1292 1338 IPR019787 -
Apr6g0102 2225 Pfam PHD-finger 78 131 IPR019787 -
Apr6g0102 2225 MobiDBLite consensus disorder prediction 2186 2225 - -
Apr6g0102 2225 ProSiteProfiles Bromodomain profile. 1183 1231 IPR001487 GO:0005515
Apr6g0102 2225 ProSiteProfiles Zinc finger PHD-type profile. 1290 1340 IPR019787 -
Apr6g0102 2225 CDD Bromodomain 1139 1245 - -
Apr6g0102 2225 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 269 338 IPR001739 GO:0003677
Apr6g0102 2225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1292 1339 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0102 3 2224 C2H2 Transcription Factor Family AT3G01460 45.554 0.0 1778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr6g0102 Bromodomain 8.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0102 K22768 - gmx:100820223 3426.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0102 6 1008310 1023313 Apr6g0102 6 1008310 1023313 ECH