Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0101 ATGGAGTCTGGAAGACTTTTCTTTGATGCCTCTGCTTGTCGTGGGAACAACATGCTCTTTCTCGGGAATGCTGAGCTTGCTTTCCGAGCAGGAAGATCGATGATGAGCATGGAGGAAGGGTCAAAGAGGCGACCTTTCTTCACCTCACCAGATGAACTGTTTGATGAGGAGTATTATGAGGAGCAGTTGCCGGAAAAGAAGCGCCGCCTCACTTCTGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAAGAAGAGAACAAACTGGAGCCGGAGAGGAAGACCCTGTTGGCTAAGAAACTGGGGTTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCGTCCTATGATTCAATTGTGAAGGAGAATGAGAAACTCAAATCTGAGATGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCATTACATGACAAGAAAATTGATCCACTTCTGGTAGATGATATAGCTCCAATTTTCAGCACAAAGGTGGAGGACCACCTGAGTAGTGGGAGTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCCCAGCTAGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGATGTGTGGCCCCAGTTGAGAGGGTTCAATCAGAGGAGGAGGATGGAAGTGATGACGGGAGGAGTTACTTGGATGTGTTTGTGGCATCGGAAACTGAGCACCAAAGCCATGAGGAAGGAGAGGCATTGGGTTGGTGGAGTAATATGTATTATGTTGGATAG 855 0.476 MESGRLFFDASACRGNNMLFLGNAELAFRAGRSMMSMEEGSKRRPFFTSPDELFDEEYYEEQLPEKKRRLTSEQVHLLEKSFEEENKLEPERKTLLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSSYDSIVKENEKLKSEMVSLNEKLQVQAKEVPEEPLHDKKIDPLLVDDIAPIFSTKVEDHLSSGSVGSAVVDEGSPQLVVDSVDSYFPADNYGGCVAPVERVQSEEEDGSDDGRSYLDVFVASETEHQSHEEGEALGWWSNMYYVG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0101 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 257 - -
Apr6g0101 284 SUPERFAMILY Homeodomain-like 66 132 IPR009057 -
Apr6g0101 284 SMART HOX_1 64 125 IPR001356 GO:0003677
Apr6g0101 284 Coils Coil 141 168 - -
Apr6g0101 284 CDD homeodomain 66 122 IPR001356 GO:0003677
Apr6g0101 284 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Apr6g0101 284 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Apr6g0101 284 Gene3D - 59 128 - -
Apr6g0101 284 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Apr6g0101 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 257 IPR045224 GO:0003700
Apr6g0101 284 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Apr6g0101 284 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Apr6g0101 284 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0101 Apr-Chr6 1005218 1008183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0101 1 277 Homeobox Transcription Factor Family AT3G01470 58.865 5.96e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr6g0101 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0101 K09338 - gmx:100797836 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0101 6 1005218 1008183 Apr6g0101 6 1005218 1008183 ECH