Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0077 ATGGAGTATGTTTTGGAAAAAAGATTTCCTCTTAGGGCAGAAGATTACAATCTATATGAAGAAGTTGGTGAAGGCGTCAGCGCATCGGTATACAGGGCTCTCTGCATTCCCCTCAATGAGATAGTTGCCATCAAGGTTCTCGATCTAGAGAAGTGCAATAATGATTTGGATGGCATTCGAAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATGTTTTAAGGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTGATGCCATACATGGCTGGGGGGTCTTGCCTTCATATAATGAAATCTGCTTATCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTGTTGCGTGAGGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCTGGGAATATTTTGCTAGATTCTAATGGTGCTGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGGCATGCCCCATTTTCCAAGTACCCACCAATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAGGAGATTTTCAAAGGCTAAAGAGGCAGATTTATTAATGCAAAACAAGGCTCTTTATGAGGATAAGGAGCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGATGATTTAAAAAGTCAAGCTGCTCTTATTCAAGACGATGACATACCAAATGCAGAAGAGCCAGATAGGGATAAGAAACAAAAAAACAGTTTGGATGACTTCAGGGTTCCAGCAGAAGGGCTATCTGCTGTAGCAGCTAATCATTCAGATGGTGCACCCACGCAAGACAAGGAGGATGGATTTAACAATATTCAGGATTTGGAGGGTTCACTTGCGTCATTTCCTATCAAACCTCTTCAAGCACTCAAAGGTTGTTTTGATATGTGTGAGGATGACATTAATAACAGCAGTCCAAGAGAGTCTGATCATGATTATGGGAGAATTGACAATGAATGTTCTGGGCCAAGTACTTCATTATCACAAAATGCTACCACTCAGCAAAAAAAGTTTTCTAGTGGTTCTTTGCTACCTGATAATTTTCTTCTTCCCAAAAAAGTTGTTACTGATGGAGACAGGTATTATCTACAATCTAAATATTCTTCAGAGAGGAATCATAGTGGTCCATTGCAATATCGGCAGAAGAGAGATACCTACAACCTTCCTTCAGTTGATGACACATCTGAAGGAGCATTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACACCCGCAGATATCAGTCAAATGGGTCCTTCAAACAGCAATTCTGGCCCTGTTGTTAGTCCTACCAGTCCACCAAATCAGAATTTCAAGGCTGCCTCTATTCTTCCATCACTGCAGTGCATCTTGCAACAGAATGGTTTGCAGAGGGAAGAAATTATTAAGTTAATAAAGTATGCAGAGCAATCTTGTGGCAAGAATACAGAATCAGCTGAGGCAGGGGCAATTGATATTTTGCAGGCACCGCCTGTGACAACTAGGGAGAGAGAGCTGCAATTTCAGGTGATTCAACTCCAACAGAGCATTGGGAGCCTTGTTGAGGAGTTGCAAAGACAAAAGACGAAAAATGTTCAGTTGGAGAAACAGTTGAGCAGTATGGTTAACAAAGTTGAAAAGTAA 1848 0.4113 MEYVLEKRFPLRAEDYNLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLRAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRRFSKAKEADLLMQNKALYEDKEQLSQKEYIRGISAWNFNLDDLKSQAALIQDDDIPNAEEPDRDKKQKNSLDDFRVPAEGLSAVAANHSDGAPTQDKEDGFNNIQDLEGSLASFPIKPLQALKGCFDMCEDDINNSSPRESDHDYGRIDNECSGPSTSLSQNATTQQKKFSSGSLLPDNFLLPKKVVTDGDRYYLQSKYSSERNHSGPLQYRQKRDTYNLPSVDDTSEGAFVQRRGRFKVTPADISQMGPSNSNSGPVVSPTSPPNQNFKAASILPSLQCILQQNGLQREEIIKLIKYAEQSCGKNTESAEAGAIDILQAPPVTTRERELQFQVIQLQQSIGSLVEELQRQKTKNVQLEKQLSSMVNKVEK* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0077 615 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Apr6g0077 615 MobiDBLite consensus disorder prediction 395 418 - -
Apr6g0077 615 Coils Coil 585 612 - -
Apr6g0077 615 Pfam Protein kinase domain 16 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0077 615 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Apr6g0077 615 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 247 612 - -
Apr6g0077 615 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 249 - -
Apr6g0077 615 MobiDBLite consensus disorder prediction 380 418 - -
Apr6g0077 615 SUPERFAMILY Protein kinase-like (PK-like) 13 236 IPR011009 -
Apr6g0077 615 Gene3D Transferase(Phosphotransferase) domain 1 97 313 - -
Apr6g0077 615 MobiDBLite consensus disorder prediction 442 470 - -
Apr6g0077 615 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 249 - -
Apr6g0077 615 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 247 612 - -
Apr6g0077 615 SMART serkin_6 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0077 615 ProSiteProfiles Protein kinase domain profile. 16 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0077 615 MobiDBLite consensus disorder prediction 442 508 - -
Apr6g0077 615 CDD STKc_OSR1_SPAK 14 249 - -
Apr6g0077 615 MobiDBLite consensus disorder prediction 489 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0077 Apr-Chr6 720845 734703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0077 1 612 MAP Kinase Kinase Kinase Kinase AT5G14720 60.553 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Apr6g0077 Pkinase 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0077 K08835 - cit:102614121 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0077 6 720845 734703 Apr6g0077 6 720845 734703 ECH