Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0068 ATGGCCGCCACGGCAACTGCCCCTTCAATGGGTCCACGATATGCACCACCAGATCCGACACTGCCTAAACCGTGGAGGGGTCTTGTGGATGGCAAGACTGGATATCTTTACTTTTGGAATCCTGAGACCAATGTCACGCAATATGAGAGACCCTCGAGCTCAGCTGGCCCACCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCATCTCAAGGGCTGCAGCGTGGTCGCAGTCCTGATTTAAGTGATAGGTATGATAGAAATGGCAGTGCTGGGTCAAATGAAGCTGGATCACGGAACCATCAGAGTTCCAAAGGTGGAAGTTATAGTTCTCATAATGTTCCAAATGGAACACATGTTGCTGGCAATGCTAATTCTTCTGTCAGAGGTCATGGGGCATTGGATGCTGGAGCTGGATTATCTCCAGAGTCTTATAGACGTAGGCATGAAATTACTGTTACTGGAGACAATGTGCCTCCACCTCTTACATCATTTGGGTTTACTGGCTTTCCATCTGAGATTCTGAAAGAGGTACAAAATGCTGGCTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCGATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTGATTCCGGCATTTATCCACCTGAAGCGCTGTGGTAATAACTCCAGAATGGGCCCCACTGCATTGGTGCTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCAAGAATTTCTTGTGCATGTTTATATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGACGCTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCATCAGGTTTCTTACCTTGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGCTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCAAAGGAAGTTAGGAAAATTGCAGCTGATCTGCTGGTCAAGCCTGTCCAGGTCAACATTGGCAATGTAGATGAGCTTGTTGCCAACAAATCCATTACTCAGCATGTTGAAGTATTGTCACCAATGGAGAAACAGAGACGGCTGGAACATATATTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAACCTGACACGTCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAATCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCTGCTCGAGGACTGGACATCAAAGACATAAGGGTGGTTGTCAATTATGACTTCCCTACAGGAGTGGAAGATTATGTACATAGGATTGGAAGGACTGGGAGAGCTGGAGCAACTGGTGTAGCGTACACTTTCTTTGGGGATCAGGATGCTAAATATGCTTCAGATCTCATCAAGGTTTTGGAAGGTGCAAACCAGCGGGTCCCTTCAGAACTTCGAGATATGTCATTGCGGGGTGGTGGGATGGGCAGATCCAGACGATGGGGTTCTGGTGGTCGTGGGGGGCGTGGTGATTCTGGATATGGTGCTAGGAATATCGACTCAGGATATGCTGGAAGGGGTAATGATGCAGGATATGGTGGAAGAAGCAGTGATTCAAACTATGGAGGACGGGGAGAGTGGGGGACTGCTGCTTCTGGCAGAGGTGGCGGCCGTGGATCTGACTATGACTCTCAGAGGAACGATCGAGGTAGGAGCCCGGACAAGGGATCTAGTTGGAGTGATCGCTACAAAAGCATCAACCGTGATCGCAGTCGTAGTCCTGACAGGGTAGCACTGCCTCAACATTCCCATGGCAGCTTTCACAAAGCAATGATGGAGCGTGGTGGATGGGATGGTGATCGTAACAAGAGCAGTAATCAGGATAGAAGCCGCAGTCCTAGCCCTTACAGACAGGAGAGGGCCCCAGCTGGTCGTGAGCGATCCCCAGTTTATAGTTTCCATCGATCAATGATGGGACAAGGTCAATCCTCCCCTTCATCTCATCGGCATCGTCCACCCCATTATGGTGATGAGAGTGGTAAAGAGGAAAGAAATTCTAGATATACACGCAGTCCTCATCGAAACTCACCCTCCTCCCTGGGTGGTGGTAGGACTAATAATAGTCCTTCAAAAGAGTGGGGAGGATCAGTGGGTGATGGAAGATATGGTGGATCTCATTCATCTTATAATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATCGGTCACGATGATGCCATATAA 2424 0.4781 MAATATAPSMGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAGPPKSSSVPSSSVQVQQSSQGLQRGRSPDLSDRYDRNGSAGSNEAGSRNHQSSKGGSYSSHNVPNGTHVAGNANSSVRGHGALDAGAGLSPESYRRRHEITVTGDNVPPPLTSFGFTGFPSEILKEVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSRMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLSPMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGANQRVPSELRDMSLRGGGMGRSRRWGSGGRGGRGDSGYGARNIDSGYAGRGNDAGYGGRSSDSNYGGRGEWGTAASGRGGGRGSDYDSQRNDRGRSPDKGSSWSDRYKSINRDRSRSPDRVALPQHSHGSFHKAMMERGGWDGDRNKSSNQDRSRSPSPYRQERAPAGRERSPVYSFHRSMMGQGQSSPSSHRHRPPHYGDESGKEERNSRYTRSPHRNSPSSLGGGRTNNSPSKEWGGSVGDGRYGGSHSSYNGEEEEGMIPDEEGMIGHDDAI* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0068 807 MobiDBLite consensus disorder prediction 726 746 - -
Apr6g0068 807 SMART ww_5 20 53 IPR001202 GO:0005515
Apr6g0068 807 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Apr6g0068 807 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Apr6g0068 807 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Apr6g0068 807 MobiDBLite consensus disorder prediction 91 129 - -
Apr6g0068 807 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Apr6g0068 807 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 643 - -
Apr6g0068 807 Gene3D - 145 376 IPR027417 -
Apr6g0068 807 MobiDBLite consensus disorder prediction 540 807 - -
Apr6g0068 807 MobiDBLite consensus disorder prediction 47 81 - -
Apr6g0068 807 SMART helicmild6 426 506 IPR001650 -
Apr6g0068 807 Gene3D - 11 58 - -
Apr6g0068 807 MobiDBLite consensus disorder prediction 1 27 - -
Apr6g0068 807 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Apr6g0068 807 SMART ultradead3 186 389 IPR014001 -
Apr6g0068 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Apr6g0068 807 CDD WW 22 51 IPR001202 GO:0005515
Apr6g0068 807 MobiDBLite consensus disorder prediction 663 683 - -
Apr6g0068 807 Gene3D - 377 547 IPR027417 -
Apr6g0068 807 MobiDBLite consensus disorder prediction 617 653 - -
Apr6g0068 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Apr6g0068 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Apr6g0068 807 MobiDBLite consensus disorder prediction 47 147 - -
Apr6g0068 807 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Apr6g0068 807 MobiDBLite consensus disorder prediction 711 725 - -
Apr6g0068 807 MobiDBLite consensus disorder prediction 747 769 - -
Apr6g0068 807 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 129 643 - -
Apr6g0068 807 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Apr6g0068 807 CDD SF2_C_DEAD 386 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0068 Apr-Chr6 636405 641888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0068 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 34.204 1.32e-66 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0068 K12823 - gmx:100816455 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0068 6 636405 641888 Apr6g0068 6 636405 641888 ECH