Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0067 ATGGAGTTTAATCCAAGCTTCCAAGGCCAGCACCCATACCTTTCAAGCTTTTTCCCTGAAAATCCATGCTCAAAGCAAGAGACTCAAACCATGTTACCCTTACAAAGCTCCATTCTCGTTGCACCATCACCACCATCCAACCATAGCCCCATGTTTCTCCCCAACACTCTCAACCATTACTTGAATGTGCCTAATTACCTCCACCACCCTTCTTCATCCATCACCAACCCCTTCTATGGGACAATTGGTGATGGGTCTCAAGGAGGTTTTGTCAACACTCACCATCGTCACCCTGTGTCGACTTTAGCACCAAACAACAACAAAATGGAACCTTTGCATGGTAATCACCAGAGAGACAAAGTTATTTGGGACTTTTCTCAAAAAACTTTGGTTGAACCTTCTCAAGCTTCTTCCTCAAGGCTAATTAACCCACTCTCACCATTTCCAATTTCTAGTGATCATGGATTGGTGATGAGTGATCAGAAAAGAGTAAAGGAGGAGAACAATCCAAACATTCCTAATGCTAACTTGATCAAAGGACAGTGGACACCAGATGAGGACAGGGCTCTTGTGGAATTGGTGAAACAATATGGATTAAAGAAATGGTCCCACATCGCAAAGTCTCTGAATGGCAGAATTGGGAAGCAGTGTCGAGAAAGATGGCACAATCATCTCCGCCCAAACATTAGGAAGGACTCATGGACCCTAGAGGAAGACATAATGCTGATCAGATCCCACCAAGAAGTTGGAAACAAATGGGCAGAGATTGCAAGGAGATTGCCTGGTAGGACTGAAAACACCATCAAGAACCATTGGAATGCCACTAAGCGACGCCAAAGATGCAAGAAGCCGAAGAACAAGTCTTCCACTCCTGAAGGTTCATTGCTCCAAGCCTATATCAAAAGGGTCACTGAAAATGAAGAAGCTGCAAAAAAGCTTAAGAAATCTATGTGCAATAAGAATAAGAATGTGTTGGATTGTAGTTGTAATGATTTAGCTCTAATGTTTCCCTATGATCACTCTCCACATAACGTGCTCAATGGAAATGGAAACAGTAGTGGCTATGCACCGATTCAAGTCAATAACAATGATGATGGTAGAAACCTTCTCTACGGAGCAATGATGCGGTGCAGTGATGGAAAACTTGGTAGCAAAGGATGA 1161 0.4315 MEFNPSFQGQHPYLSSFFPENPCSKQETQTMLPLQSSILVAPSPPSNHSPMFLPNTLNHYLNVPNYLHHPSSSITNPFYGTIGDGSQGGFVNTHHRHPVSTLAPNNNKMEPLHGNHQRDKVIWDFSQKTLVEPSQASSSRLINPLSPFPISSDHGLVMSDQKRVKEENNPNIPNANLIKGQWTPDEDRALVELVKQYGLKKWSHIAKSLNGRIGKQCRERWHNHLRPNIRKDSWTLEEDIMLIRSHQEVGNKWAEIARRLPGRTENTIKNHWNATKRRQRCKKPKNKSSTPEGSLLQAYIKRVTENEEAAKKLKKSMCNKNKNVLDCSCNDLALMFPYDHSPHNVLNGNGNSSGYAPIQVNNNDDGRNLLYGAMMRCSDGKLGSKG* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0067 386 PANTHER MYB PROTEIN-RELATED 157 315 - -
Apr6g0067 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 229 IPR017930 -
Apr6g0067 386 CDD SANT 182 225 IPR001005 -
Apr6g0067 386 PANTHER MYB DOMAIN PROTEIN 100-RELATED 157 315 - -
Apr6g0067 386 ProSiteProfiles Myb-like domain profile. 174 225 IPR001005 -
Apr6g0067 386 Pfam Myb-like DNA-binding domain 182 242 - -
Apr6g0067 386 ProSiteProfiles Myb-like domain profile. 226 276 IPR001005 -
Apr6g0067 386 Gene3D - 233 293 - -
Apr6g0067 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 280 IPR017930 -
Apr6g0067 386 CDD SANT 233 276 IPR001005 -
Apr6g0067 386 Coils Coil 296 316 - -
Apr6g0067 386 SUPERFAMILY Homeodomain-like 176 272 IPR009057 -
Apr6g0067 386 Gene3D - 178 230 - -
Apr6g0067 386 SMART sant 230 278 IPR001005 -
Apr6g0067 386 SMART sant 178 227 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0067 Apr-Chr6 628608 631479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0067 175 303 MYB Transcription Factor Family AT4G18770 68.217 1.27e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr6g0067 Myb_DNA-bind_6 1.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0067 K09422 - ccaj:109801641 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0067 6 628608 631479 Apr6g0067 6 628608 631479 ECH