Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0060 ATGGAATCACCCGATAACGAGCATGTAGTGGGTGGCGCCGAACCCAACGACGTCGTTAGACCCTTTTCCCACAGAGAAGAACCCCACAACTCCCAACCCCTCACCGGCGATGGTGCCAGCCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTCATCATGAAGGACAGGAAAACTGGGCAGCCTCGGGGATTCGGGTTTATAACATACGCGGATCCCTCTGTGGTTGATAAAGTGATTGAGGACCCTCATATCATCAATGGCAAACAGGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGCGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCTGTTGATGATCTTTTGTCCATGGGGAACAAGATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAATGCACCACCTCCATCATCCAAGCGCTACAATGACTCGAGGTCTTCATACAGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGCAGCTTTGGAGTTGGAGGTGGTTACAGATCCGGTGGTGTCTATGGTGGTAGGGGCAGTGCATATGGTGGCTATGGAAGTGAATTTGGTGGATATGGAGGATATGCTGGTGCAATGGGGCCCTATAGAGGAGATCCCTCCCTTGGGTACTCTGGTCGTTATGGTGGAAGCTTTAGCAGGAGCTATGATCTTGGTGGGTATGCAGGAGCCAGTGAGAATTATGGAGCATATGGTGGTGGTGCTGGTGGTGCTGGTGCTTCTGGTGGCGGTGCCTATCAAAGTGGCTATGATGCTGGCCTAGGGGGCGGATATGGAGGGCCCAGTGGAGGCCCCTTCTATGGAAGTAGAGGAGGATACGGCGCTGGTCGATATCACCCTTATGGAAGATAA 1110 0.4883 MESPDNEHVVGGAEPNDVVRPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNAPPPSSKRYNDSRSSYSGGYGDAYDGFGGSFGVGGGYRSGGVYGGRGSAYGGYGSEFGGYGGYAGAMGPYRGDPSLGYSGRYGGSFSRSYDLGGYAGASENYGAYGGGAGGAGASGGGAYQSGYDAGLGGGYGGPSGGPFYGSRGGYGAGRYHPYGR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0060 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Apr6g0060 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Apr6g0060 369 Gene3D - 42 121 IPR012677 -
Apr6g0060 369 MobiDBLite consensus disorder prediction 1 41 - -
Apr6g0060 369 MobiDBLite consensus disorder prediction 205 226 - -
Apr6g0060 369 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 369 - -
Apr6g0060 369 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 369 - -
Apr6g0060 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Apr6g0060 369 SMART rrm1_1 131 204 IPR000504 GO:0003723
Apr6g0060 369 SMART rrm1_1 43 114 IPR000504 GO:0003723
Apr6g0060 369 SUPERFAMILY RNA-binding domain, RBD 128 238 IPR035979 GO:0003676
Apr6g0060 369 Gene3D - 130 212 IPR012677 -
Apr6g0060 369 SUPERFAMILY RNA-binding domain, RBD 33 120 IPR035979 GO:0003676
Apr6g0060 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0060 Apr-Chr6 562479 565947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0060 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 5.06e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0060 K12741 K14314 gmx:100793209 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0060 6 562479 565947 Apr6g0060 6 562479 565947 ECH