Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0050 ATGGCCTCTTCTAGCTACTCCAATTCACCATGTGCAGCGTGCAAGTTTTTGAGGAGGAAGTGCATGCCAGATTGCATTTTTGCCCCATATTTTCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCAAGCAATGTGAGCAAACTCCTCAACGAGGTGCAACCTCATCAAAGGGAGGATGCTGTGAACTCTTTGGCATATGAAGCAGAAGCACGAATAAAAGACCCTGTCTATGGTTGTGTTGGAGCCATTTCAGTCCTCCAAAGGCAAGTCCTTAGGCTCCAAAAGGAACTCGATGCCACAAATGCTGATTTGATCCGCTATAGCTGTAATGAAATGCCAACTACTCATCAAGCTGGAGGTAGAAGGACGAGTGATGGAGTAGGAGGTTCCTCTCATGGTTTTTATTATCCTTCTACTACTTGGAACAATGATCCTTGTGGAGACAGCTACCCAAGAGGTGATACATAA 486 0.4465 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRYSCNEMPTTHQAGGRRTSDGVGGSSHGFYYPSTTWNNDPCGDSYPRGDT* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0050 161 Coils Coil 89 109 - -
Apr6g0050 161 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Apr6g0050 161 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Apr6g0050 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 128 - -
Apr6g0050 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0050 Apr-Chr6 461244 461729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0050 4 128 AS2 family AT3G27650 80.952 1.47e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr6g0050 LOB 8.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0050 - - gmx:100788656 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0050 6 461244 461729 Apr6g0050 6 461244 461729 ECH