Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0048 ATGAACACTCCAAAATCGCGATCACTCTTCACTCACATCAACTCGAGAGAGCTCAATGCTTTCCCAGTTCGCAAACGACCTCGCATGGATGGATTCGTCTCTGGCTTCAACGAGATCGGAGCCGTTGCCGTTCAACACAATGCCGAAGACACCATTCCCCTTTCTCTCTCCTTCTGTAAGACCTCAAAATTTTCAAACATCCTCGCTTTATCCGATGAGGATGGATATGTGAGCTTGTTCGATACTCGACGTCACTTCCCCGTTACTGCAACCTTTGAACAAAACGCAGAGGAAGCGAAGATATGCGAGTGGGTTTCGCATCTTAATGCTGTTTTTGATGTCTGTTGGATTAAGGATGATACCCAGATTCTCACTGCCTCTGGTGATCAAACGATGAAGGTATGGGATGTTCAAGAAAAGAGATGTCTTGGAGTGTTGACGGGGCACACGGGAAGTGTGAAATCTGTGTGTTCTCATCCAACTAATGCTGATATTATTGTCTCTGGTTCAAGAGACGGATCCTTTCGTCTTTGGGACTTGAGATGCAAGTCCACATCTAGGAGTACTTGCTTCTATAGTTCAATGGCTGTCGTCAATGGAGCACATCTTTCATCTCAAGCAAAACGAGTTAGGAGGGGAAAGGCTGCTTCAATGAGCATTACATCTGTTCTTTGTCTCAAGGACCAAGTTTCCATAGCCACTGCAGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAGAAGTATTGTCACGCAGACATGTCCATGTCCTCAGTCAACTGAAAAGCAAAGATTACATGGAATATCTAGCTTGTCCCAAGATGACAGTGGACTTTTTCTTTCAGCCTCCTGCATGGATAACCGAGTTTATCTATATAACATCCTTCAACTTGAAAAGGGGCCATTGAGATCTTTTTCTGGATGTCGAATAGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCATCACACATAGTGAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGCAGGTTGACAAGCCTTTGGAAGAACCTACTATTTTGAAAAGTCATGACGGTGAAGTTACAGCAGTTGACTGGTGTTGCTCTGAGGTTGGCAAATTAGCAACGTCTTCTGATGATTTTACAGTTCGGATATGGAACAAAAACAGTTATATCTCCAAAGCAAAGTCTGCTTCTGCCATTCGAAGAAGGGTAATGGCAATGCCTAGTATAGAGTGCAAAATGCTTTTAAATAATGAAGAAATGTGCCCCAAGTCAAGTAACAATACTTTTTTGTCCAATGAAGCCCCGCAATGCTCAATTAAGCCAGCCAGTCCAATCACACCACTTAAAATAAATGTATCAGAAGACCATACGAACCAACTTTCATCCGGCTTAGATCTAACTGCACCGTCCGAAAAAACTCCAGAATCTGCTTGGAAGAGCCCCTCATCTGTATTGAACCCTCCATCCTCCCTAAAACGAACTATCCGGGACTACTTTTTAGCATCCTCATGA 1518 0.4328 MNTPKSRSLFTHINSRELNAFPVRKRPRMDGFVSGFNEIGAVAVQHNAEDTIPLSLSFCKTSKFSNILALSDEDGYVSLFDTRRHFPVTATFEQNAEEAKICEWVSHLNAVFDVCWIKDDTQILTASGDQTMKVWDVQEKRCLGVLTGHTGSVKSVCSHPTNADIIVSGSRDGSFRLWDLRCKSTSRSTCFYSSMAVVNGAHLSSQAKRVRRGKAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLRSIVTQTCPCPQSTEKQRLHGISSLSQDDSGLFLSASCMDNRVYLYNILQLEKGPLRSFSGCRIESFFVKSAISPDASHIVSGSSDGNAYVWQVDKPLEEPTILKSHDGEVTAVDWCCSEVGKLATSSDDFTVRIWNKNSYISKAKSASAIRRRVMAMPSIECKMLLNNEEMCPKSSNNTFLSNEAPQCSIKPASPITPLKINVSEDHTNQLSSGLDLTAPSEKTPESAWKSPSSVLNPPSSLKRTIRDYFLASS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0048 505 Gene3D - 192 465 IPR015943 GO:0005515
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Apr6g0048 505 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Apr6g0048 505 Pfam WD domain, G-beta repeat 104 136 IPR001680 GO:0005515
Apr6g0048 505 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Apr6g0048 505 Pfam WD domain, G-beta repeat 353 387 IPR001680 GO:0005515
Apr6g0048 505 Pfam WD domain, G-beta repeat 305 342 IPR001680 GO:0005515
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 387 IPR001680 GO:0005515
Apr6g0048 505 SUPERFAMILY WD40 repeat-like 58 390 IPR036322 GO:0005515
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 345 IPR001680 GO:0005515
Apr6g0048 505 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Apr6g0048 505 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Apr6g0048 505 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Apr6g0048 505 MobiDBLite consensus disorder prediction 461 490 - -
Apr6g0048 505 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 1 503 - -
Apr6g0048 505 SMART WD40_4 302 343 IPR001680 GO:0005515
Apr6g0048 505 SMART WD40_4 45 81 IPR001680 GO:0005515
Apr6g0048 505 SMART WD40_4 206 246 IPR001680 GO:0005515
Apr6g0048 505 SMART WD40_4 97 136 IPR001680 GO:0005515
Apr6g0048 505 SMART WD40_4 347 387 IPR001680 GO:0005515
Apr6g0048 505 SMART WD40_4 139 179 IPR001680 GO:0005515
Apr6g0048 505 SMART WD40_4 262 297 IPR001680 GO:0005515
Apr6g0048 505 Gene3D - 40 190 IPR015943 GO:0005515
Apr6g0048 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 387 - -
Apr6g0048 505 PANTHER BNAA06G31940D PROTEIN 1 503 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0048 107 342 U-box Gene Family AT1G04510 24.521 3.40e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0048 K11790 - gmx:100819114 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0048 6 441303 444504 Apr6g0048 6 441303 444504 ECH