Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0044 ATGGAAAGGCTTTCAGAAGTTGTCACTAACCACAAGTGGGGCACTCACTTTGAGAACATGTCAACTATTCCCATATATGGTTTGGCACAATGCTTTCAAGACCTTTCACACATTGATTGCCTTCTTTGCTTTGCTGCCTTACGCACAAAGCTCCCTCGATGCATCCCTTCAGTGGCTGCACGCATTTACCTTGATGGTTGTTTCCTTCGCTATGACAACTACAGTTTCTACTCAGAAGACACTGACCCTTTAAGGGACACTGTGAACTGCACCTCCCAGTATGGTTCTGTGGTTAGTGAAGCTGAAAGGTTGAAGCTTGTTGAGAGTGTTGGCAAGGTGGTTGACAATGTGGTGAGGGTGGCAGTGACTGAGGGAGGAGGATTTGCTGTTGGAGAAGGTGAGGGTGCTTATGCCTTGGCAGAGTGTTGGAAAACTGTTGGGAAAAAAGGGTGTAGAGAATGCTTAAAGAAAGCTGGAAATGAGGTCAGAGGGTGCTTGCCAAAGAAGGAAGGGAGGGCCTTGAATTCTGGGTGTTATTTGAGATATTCCACTGTTAAGTTCTACAATCAAGGAGGTGAAGCAGGTGAAGGAGATGTGTCTTCAAGGAAACAAACCATCATAGCAGCGGTGTTAGTTTTGACTGCAGTTGTTGTGCTCTCTCTTGCTGCCTCTTATGTAGCCTTCACAAAATTATCAAACAGGAGAAAAAAAAACAATTTTGTTCAGATTCCCACATCCTTAAAGAATTCTAGCTTGTATTACAAATATGAAACTCTTGAGAAGGCCACGGATTATTTCAGCACTTCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTATTCAAGGGGACTCTCCCAAATGGGAAAGATGTTGCTGTAAAGAGATTGGTTTTCAATAATAGGGAATTGGTGGATGAATTCTTCAATGAAGTGAATTTGATTAGTAGAATAGAACACAAGAACCTTGTCAAACTATTCGGTTGTAGTATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACTTACCTAACAAGAGCTTAGATCAATTCATTTTTGAGAAGAACAAAACAAAGATTCTAAAATGGGAGCAGCGGTTTGACATAATTCTTGGAACTGCAGAAGGACTTGCATATCTTCATGAAGGTTCTGAAGTAAGAATCATCCATAGAGACATCAAAAGCAGCAATGTTCTTCTGGATGCGAACCTCATCCCTAAAATTGCAGATTTTGGCCTTGCCCGGTGTTTTGATGCTGATAAAACGCATCTAAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTTATTCGAGGACAACTCACAGATAAAGCTGATGTTTTTAGTTTTGGAGTACTTGTTCTGGAGATTGTAAGTGGCATGAAGAATAATGTCTTCCGTGAGGATTCTGGTTCCCTTTTGAATACGGTATGGAGACTTTACCAATCAAACAGATTGGCTGAAGCTGTTGATCCTTGCTTGGGACATGATGTTCCTGCAGAAGAAGCATCAAGGGTGTTTCAAATTGGATTACTGTGCACACAAGCTTCTGCTTCACTGAGGCCATCCATGGCTCAAGTTGTTTGCATGTTAAGTAATTCAAATTTGAATGTCCCTATACCAAAACAGCCTCCATTTTTGAACTCTGGATTGGTAGATCAAACAGCTTCATTAGGTTTTAGCACAAACAGTACTTCATCAAATGCATTTAAGAAGATTGGCATGTCCTACAGCTCCTCAGAGTCTAGTACACGCAGCTTAGTTAGGCAATCAAGAAGTGACGAAACAATTGAGGAAGCTTGA 1812 0.4183 MERLSEVVTNHKWGTHFENMSTIPIYGLAQCFQDLSHIDCLLCFAALRTKLPRCIPSVAARIYLDGCFLRYDNYSFYSEDTDPLRDTVNCTSQYGSVVSEAERLKLVESVGKVVDNVVRVAVTEGGGFAVGEGEGAYALAECWKTVGKKGCRECLKKAGNEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEAGEGDVSSRKQTIIAAVLVLTAVVVLSLAASYVAFTKLSNRRKKNNFVQIPTSLKNSSLYYKYETLEKATDYFSTSRKIGQGGAGSVFKGTLPNGKDVAVKRLVFNNRELVDEFFNEVNLISRIEHKNLVKLFGCSIEGPESLIVYEYLPNKSLDQFIFEKNKTKILKWEQRFDIILGTAEGLAYLHEGSEVRIIHRDIKSSNVLLDANLIPKIADFGLARCFDADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVFSFGVLVLEIVSGMKNNVFREDSGSLLNTVWRLYQSNRLAEAVDPCLGHDVPAEEASRVFQIGLLCTQASASLRPSMAQVVCMLSNSNLNVPIPKQPPFLNSGLVDQTASLGFSTNSTSSNAFKKIGMSYSSSESSTRSLVRQSRSDETIEEA* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0044 603 ProSiteProfiles Protein kinase domain profile. 266 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr6g0044 603 ProSiteProfiles Gnk2-homologous domain profile. 81 187 IPR002902 -
Apr6g0044 603 Gene3D Transferase(Phosphotransferase) domain 1 342 542 - -
Apr6g0044 603 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 1 596 - -
Apr6g0044 603 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 596 - -
Apr6g0044 603 Gene3D - 1 76 IPR038408 -
Apr6g0044 603 Gene3D - 96 187 IPR038408 -
Apr6g0044 603 MobiDBLite consensus disorder prediction 579 603 - -
Apr6g0044 603 MobiDBLite consensus disorder prediction 579 593 - -
Apr6g0044 603 CDD STKc_IRAK 272 534 - -
Apr6g0044 603 ProSiteProfiles Gnk2-homologous domain profile. 1 76 IPR002902 -
Apr6g0044 603 Pfam Salt stress response/antifungal 128 184 IPR002902 -
Apr6g0044 603 Pfam Salt stress response/antifungal 21 74 IPR002902 -
Apr6g0044 603 Pfam Protein tyrosine and serine/threonine kinase 268 533 IPR001245 GO:0004672|GO:0006468
Apr6g0044 603 Gene3D Phosphorylase Kinase; domain 1 225 341 - -
Apr6g0044 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Apr6g0044 603 SUPERFAMILY Protein kinase-like (PK-like) 250 552 IPR011009 -
Apr6g0044 603 SMART serkin_6 266 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0044 Apr-Chr6 415697 418571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0044 1 556 Receptor kinase-like Gene Family AT1G70520 46.632 1.34e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr6g0044 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0044 - - aprc:113867566 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0044 6 415697 418571 Apr6g0044 6 415697 418571 ECH
Apr4g1772 4 24010790 24013973 Apr6g0044 6 415697 418571 ECH
Apr7g1658 7 23736529 23744497 Apr6g0044 6 415697 418571 ECH
Apr3g0768 3 20250590 20253679 Apr6g0044 6 415697 418571 ECH