Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0036 ATGGCGTGGCATGGGCTTGGAAAGAGGAGAATATATATGAATTTTACCAGAGCTTTGACTACAACACCATTTAGGCGTGTGGCAGGGTCAAATTTTGCATCTAGCTTTGCCTCACAATCTGTTTATGCATCGGCAAGATGCATTCTAGATTTTGTCAACCACTCATCTCGAGAACAGGCTTGTTATGGCAGTGAGACTAAAGAATGTGCAATACGGTGCTTCCATGGTAGCTCACAAGTTTGGGCAAGGAATGATGCACCATTTGGTTTGAAGACTCCAAAGAAGGAGAAATATGTGAGAAGGGACAGTAGAAACCAGCCACCCGTTGAAGCTCCATATATCCCTCGTAATGTCACAGCTACCAAATCTAATCCTGATAAAACCATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACCGGAAGATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCCTCTCGGCATGGATATTGCAGAACTTGCCGCAATGGAAGTTGGCGTAAATGTCAAGAGGCTACACTCGGCTGAAGGCACAGAAATTGTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTAGCAGCCAGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCCTTTGTGGTGGTCATGCCATCAGGAGCATCAACCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTAGTGCTTGTTGTCGCTGCAGATGATGGTGTTATGCCTCAAACACTGGAAGCCATATCCCATGCAAAAGCAGCTAATGTACCAATTGTGGTTGCAATTAATAAATGTGATAAACCAGGTGCTAATCCAGAAAGAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGGTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAAGTTTCAGCAATTAAGAAAACTGGACTGGATAACCTAGAGGAAGCTTTACTACTTCAGGCTGATATGATGGATCTTAAAGCAAGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAACATGTGGTTGTGGGCTCACAGTGGGGAAGAATAAGGGCCATTAAAGATATGGCAGGAAGGTTAACCCAACAAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGTGGACTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCAAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAAGAGAATAGGCTTAGGAGTAAGATGATACAGGACAAGCGAACTAATTCAGATGATAACGAAGAGGTTCCACAGATAGTTGAAATGCCACTAATAGTAAAAGCAGATGTTCAGGGAACAGTTCAAGCTGTCACTGATGCATTGAGAACTTTAAATAGTTCTCAGGTTTTTGTGAATGTTGTCCATGTTGGTGTTGGGCCTGTTTCTCGATCTGATGTGGACTTAGCACAGGCTTGTGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCACCTACTGCACTTAGTCAGGCAGCAACTCGGGCGAGTGTCAAGATAATTCTGCACCGTGTGATTTACCACCTCTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCGCCTGGAACTTCTGAGACCCAGGTTGCTGGGGAGGCAGAAGTGCTGAACATCTTTGAAATCAAAGGGAGCAAGTCCAAGGGACCTGATGTGAAAATAGCTGGTTGTCGGGTTATTGATGGTTTTGTTACCAGGTCAGCAACCATGAGGCTTCTGAGGAGTGGGGAAGTTGTGTTTGAAGGACTCTGTACATCTCTTAAGCGTGAGAAGCAGGATGTGGATTCTGTGAAGAAGGGAAATGAGTGTGGACTAGTAATCAATGATTGGTGTGACTTCCAGATTGGAGACGTCATCCAGTGCTTGGAACAAGTCGTAAGGAAGCCCAAGTTCATTAAGTCTGAGAGTGGTGCCGTTCGAATTGAGTGCTGA 2160 0.4509 MAWHGLGKRRIYMNFTRALTTTPFRRVAGSNFASSFASQSVYASARCILDFVNHSSREQACYGSETKECAIRCFHGSSQVWARNDAPFGLKTPKKEKYVRRDSRNQPPVEAPYIPRNVTATKSNPDKTIEIFEGMTLVELAKRTGRSVSSLQDILTNVGEKVESEFEPLGMDIAELAAMEVGVNVKRLHSAEGTEIVPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASTTFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAISHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLVLEEMGGDVQVVEVSAIKKTGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMAGRLTQQATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLRSKMIQDKRTNSDDNEEVPQIVEMPLIVKADVQGTVQAVTDALRTLNSSQVFVNVVHVGVGPVSRSDVDLAQACGACIVGFNVKSPPTALSQAATRASVKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGEAEVLNIFEIKGSKSKGPDVKIAGCRVIDGFVTRSATMRLLRSGEVVFEGLCTSLKREKQDVDSVKKGNECGLVINDWCDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0036 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 38 710 IPR015760 -
Apr6g0036 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Apr6g0036 719 TIGRFAM IF-2: translation initiation factor IF-2 126 702 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Apr6g0036 719 Pfam Translation-initiation factor 2 488 590 IPR023115 -
Apr6g0036 719 CDD mtIF2_IVc 608 697 - -
Apr6g0036 719 Gene3D - 195 370 IPR027417 -
Apr6g0036 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Apr6g0036 719 TIGRFAM small_GTP: small GTP-binding protein domain 201 353 IPR005225 GO:0005525
Apr6g0036 719 Gene3D Translation factors 602 704 - -
Apr6g0036 719 Gene3D Translation factors 371 489 - -
Apr6g0036 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 488 607 IPR036925 -
Apr6g0036 719 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 38 710 - -
Apr6g0036 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Apr6g0036 719 Gene3D - 496 600 IPR036925 -
Apr6g0036 719 CDD IF2_mtIF2_II 374 469 IPR044145 -
Apr6g0036 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Apr6g0036 719 Pfam Elongation factor Tu GTP binding domain 203 359 IPR000795 GO:0003924|GO:0005525
Apr6g0036 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Apr6g0036 719 CDD IF2_eIF5B 202 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0036 Apr-Chr6 338072 344634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0036 199 588 Eukaryotic Initiation Factors Gene Family AT1G21160 27.632 1.72e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0036 K02519 - gmx:100781314 1213.75