Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0034 ATGACTCTGTTTCACTCGGTTTTCGGAGAGACAAGACAGCAAGCAACTCCCGAAGCAGAGGCTCGGACTAGTTCAGTCAACAGTGGGAGCTGGGTTTCTGACATTTGGGGATTTGCAAGGAAAGTGAAAAATACTACTACGTCAACAGCAGATCAAATCAAGGACTGTGGAGCATATATTGATTGCCCAAAATGCCATTATCGTATTGATAACAGTGATGTTTCTCCCGAGTGGCCTGGCTTTCCTGTTGGTGTGAAATTTGTTCCCTCTGATGTTGAACTTTTAGAGCATTTAGCAGCAAAGTGTTGTATTGGAAACAGAGAGGCACACATGTTAATTCATGAGTTCATCCCAACTCTTGAAGGAGACCAAGGAATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGTAGCAGTGTCCATTTCTTTCACAAAACAGCTAACGCATATGCTACTGGACAAAGAAAGCGTAGAAAGATTCATCATCAACATGGTTTGACTGAGGAGCATGTGCGCTGGCATAAGACTGGTAGGACCAAAGCTGTAACTGAAGATGGAATACATAAGGGATTTAAGAAGATCATGGTTCTTTATATGAGATCAAAGAAAGGTTCCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAGGAAGATGAGAAGGATGGTGAGTATGTGGTTTCAAAAATTTTTTATCAACAGCAGAAGCAGACTGAAAAGAATGAGGAAAATCCAGTGGTTGAAGATTCCGACGTGGCAGTGCGAACAAGTCCAAGAACCCCAAAACCAAATTCCCCTTGTCGACCTAGTGCAGGCAAATGTGTTGACTTTGATGACAATTTTGATGAGAATGAACTTCAGCCGTGCTTCCAGGATGCCAAGCCTATGCCTGGAGAATCACTTGCACCACCATCTGCATGGTTGGCTGGTGAATCACAACCTGACTGTGACTTTGATGGCTTGGAAGACATCTTATTATGCAAGGAGATGTTAAATTCCTCTGGTCTCTTAAACGATTCTGGATTGAACTCTACTTTTAATGGCATTGCCTGCAATGCAAACGAGTTGGCTGGAAATAATAATGACCATGTTTCTTATGGAGTTTCTGTCCTGGACACACTGGAATTGGATACTCCTCCAGATTTTGATCTATCTAACTTGCAATTTGGTTCTCAAGACAGCATGCTTAAGTGGATTGACAAGCTTTAA 1236 0.4223 MTLFHSVFGETRQQATPEAEARTSSVNSGSWVSDIWGFARKVKNTTTSTADQIKDCGAYIDCPKCHYRIDNSDVSPEWPGFPVGVKFVPSDVELLEHLAAKCCIGNREAHMLIHEFIPTLEGDQGICYTHPENLPGAKKDGSSVHFFHKTANAYATGQRKRRKIHHQHGLTEEHVRWHKTGRTKAVTEDGIHKGFKKIMVLYMRSKKGSKPYKTNWVMHQYHLGSEEDEKDGEYVVSKIFYQQQKQTEKNEENPVVEDSDVAVRTSPRTPKPNSPCRPSAGKCVDFDDNFDENELQPCFQDAKPMPGESLAPPSAWLAGESQPDCDFDGLEDILLCKEMLNSSGLLNDSGLNSTFNGIACNANELAGNNNDHVSYGVSVLDTLELDTPPDFDLSNLQFGSQDSMLKWIDKL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0034 411 MobiDBLite consensus disorder prediction 1 24 - -
Apr6g0034 411 ProSiteProfiles NAC domain profile. 81 242 IPR003441 GO:0003677|GO:0006355
Apr6g0034 411 Pfam No apical meristem (NAM) protein 82 223 IPR003441 GO:0003677|GO:0006355
Apr6g0034 411 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 30 409 IPR044799 GO:0003700
Apr6g0034 411 SUPERFAMILY NAC domain 66 242 IPR036093 GO:0003677|GO:0006355
Apr6g0034 411 Gene3D NAC domain 90 247 IPR036093 GO:0003677|GO:0006355
Apr6g0034 411 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 30 409 - -
Apr6g0034 411 MobiDBLite consensus disorder prediction 245 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0034 Apr-Chr6 311555 315437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0034 62 244 NAC Transcription Factor Family AT1G28470 55.851 1.15e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr6g0034 NAM 3.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0034 - - gmx:100782779 634.795