Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0030 ATGCTGAAATCAACATTCTCTTCCTTTTTCTTCTCCCATTCTGCACGACTGGGATTGCTGAGTCACAGTGAGAGACACTTGCTAATGCTCCCTCCTTCAACTTCAATTTCAATTTCAAAACCCTTCTCTCCATACCCCATAACATCAAAACCTTTCTCAACCAACCCCACCCCATACCCTCTCCAATATGAAATGATCATCAATCGTCCATCCAATTCCCACACTCGCCCTCCACCTGTTCGACCCATTGACACCCCTTCTCAGCCCTCTCCCGAACCCGACGAACCCATTTCCGAACTGGGCTTGGATAGCTGGGTCGACCGGAAACTCGCCTCCGAGGCCCAATCCGGTTCGCCAAAACCCGAACTTGACAAGGCCAAGAGGAAGTACTACAACAAACGGAGGAAGAGGATGTATGGGTCGGACTCGGAGGAAGAGAGCCGGCGGAGCGAGGATACGTTCGTGGAGCTGAAACCAGAGGTGGTGGACTTTCCCACGTTGCACCGCAGAGAGGAGGAGTTGTATTTCTATGACGCTTTTACCTATCCATGGGAGAAGGATAAGCACTACAAGATGGTGTACCAGTTGGAGAAGAAGTACTTCCCTCAACAGTGCCTAGACAATGCTTTTCTTCAACCGGGACAGTCAAATTCAAATTCAAATGAAGATGGGAAGAAGGGGAAGGGTAGGAAGAGAGTTGGTAGTAAGGGGAAGAAGGATGAGGTTGGGGGTGGTGATGACAAGTTGGTGTTTTTTGAGGAGAAAGACAAGGGTGCAAGCAAGGATCTCACGGAGAAGAAGGTTGAGGAATTCTTTAAGGGTTTGAAGAAGGTTCCTAACGATAAGGATGTTCAAGTTGGAGAGCCATTTCTTTCTTCAAGGAGGAACGGCCTTCCTCCTGTATGGGATGGTCCACATGGCACCGTGCTTTTGGTTAACAAACCCAAAGGTTGGACTTCTTTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAGAAGGTAGGCCATGCTGGCACTCTTGATCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCCACCAAAGTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTGTTCCGCTTAGGAGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGATATAAAGAGAAATGCTTTGTCCTTTGTTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGGCGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTAATTTTTAGAGTGACATGTTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAAGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATAGGGCAATATTCAGTGGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCCATCACCAAAAATTATCTCTAA 1581 0.4649 MLKSTFSSFFFSHSARLGLLSHSERHLLMLPPSTSISISKPFSPYPITSKPFSTNPTPYPLQYEMIINRPSNSHTRPPPVRPIDTPSQPSPEPDEPISELGLDSWVDRKLASEAQSGSPKPELDKAKRKYYNKRRKRMYGSDSEEESRRSEDTFVELKPEVVDFPTLHRREEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPQQCLDNAFLQPGQSNSNSNEDGKKGKGRKRVGSKGKKDEVGGGDDKLVFFEEKDKGASKDLTEKKVEEFFKGLKKVPNDKDVQVGEPFLSSRRNGLPPVWDGPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFVGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSVDDAWDFQELEEAITKNYL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0030 526 MobiDBLite consensus disorder prediction 75 93 - -
Apr6g0030 526 Gene3D Pseudouridine synthase 304 525 - -
Apr6g0030 526 CDD PseudoU_synth_EcTruB 309 520 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr6g0030 526 MobiDBLite consensus disorder prediction 210 241 - -
Apr6g0030 526 MobiDBLite consensus disorder prediction 112 153 - -
Apr6g0030 526 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 282 524 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr6g0030 526 MobiDBLite consensus disorder prediction 136 153 - -
Apr6g0030 526 Pfam TruB family pseudouridylate synthase (N terminal domain) 328 478 IPR002501 GO:0006396
Apr6g0030 526 SUPERFAMILY Pseudouridine synthase 308 521 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr6g0030 526 Hamap tRNA pseudouridine synthase B [truB]. 306 526 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr6g0030 526 MobiDBLite consensus disorder prediction 69 99 - -
Apr6g0030 526 MobiDBLite consensus disorder prediction 223 241 - -
Apr6g0030 526 TIGRFAM TruB: tRNA pseudouridine(55) synthase 308 517 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr6g0030 526 Pfam tRNA pseudouridylate synthase B C-terminal domain 479 522 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0030 Apr-Chr6 295203 299419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0030 309 500 NAC Transcription Factor Family AT3G57150 33.333 8.01e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0030 K03177 - gmx:100793939 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0030 6 295203 299419 Apr6g0030 6 295203 299419 ECH