Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1885 ATGGAGGGCTCAAAGGAAAATCATGTGCTTCCGCTTCAGATTCCGCTCATAGCCTCCTCAAACGTTCAAGGCTGTTCAAGAATGGAGGGTGGTGTCACTGTCCATCACCGGCTGCCTCTCAGCAACATCAATCACAATATTATGGATTCTCTCGTCAACAAATTAGATCTTTCCCGCAAGTGTTCGTCACACACCGTTGGCCACTACCCTCAAGGAACTAGGAAACAGAATCTGTTAGCTCCTACCTCGAGTTACCCGTTGGATTGTGCTATCGTAAATATTCATGATTACGAGGATTCCAGTGACAATGCAATTCCAGTATTTGTGAAGCATACTGAAGCAATGCTTGACGAAATTGATAGGATAGACGAAGTTGAAATGGAAGATGTGGAGGAACCTGTTATGGACATTGACGCCTGTGATAGGAATGATCCGCTTGCAGTTGTTGAGTACATAGATGATATCTACTCTTTCTACAAGAAAATTGAGAATTCTAGCTGCGTCTCTCCAAATTATATGACCTGTCAGTTTGACATTAACGAGAAGATGAGGGCCACTCTTGTTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAAGAAACTTCAGTTAGTTGGTGTAACAGCTATGCTAATAGCTTGCAAGTATGAGGAGGTCTCCGTCCCAACTGTTGAGGACTTCATTCTGATAACAGACAAGGCATATACAAGAAATGAAGTTTTAAATATGGAGAAATTAATGGTGAATACCTTACAATTCAAGTTGTCTGTGCCTACTCCATACGTGTTCATGAGAAGATTTCTTAAGGCAGCTCATTCTGACAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAACTATGCTTGGTGGAATGTAAAATGCTCGAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATATACACAGCTCAATGTAGTCTCTACCAGTTTAAGCAATGGACTAAGACCACTGAGTGGTATACTGATTACTCAGAAGAGCAGCTTATAGAATGCTCGAGGCTGATGGTTATTTTCCATCGGAAAGCTGGATCCGGGAAACACACTGGCGTGTATAGGAAGTACAGTACTTGGAAGTATGGCTGTGCCGCAAAATTAGAACCAGCCCTGTTTCTACTGGACAGTTAA 1218 0.4269 MEGSKENHVLPLQIPLIASSNVQGCSRMEGGVTVHHRLPLSNINHNIMDSLVNKLDLSRKCSSHTVGHYPQGTRKQNLLAPTSSYPLDCAIVNIHDYEDSSDNAIPVFVKHTEAMLDEIDRIDEVEMEDVEEPVMDIDACDRNDPLAVVEYIDDIYSFYKKIENSSCVSPNYMTCQFDINEKMRATLVDWLIEVHYKFELLEETLFLTVNLIDRFLERQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLNMEKLMVNTLQFKLSVPTPYVFMRRFLKAAHSDKKLELLSFFLIELCLVECKMLEFSPSLLAAAAIYTAQCSLYQFKQWTKTTEWYTDYSEEQLIECSRLMVIFHRKAGSGKHTGVYRKYSTWKYGCAAKLEPALFLLDS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1885 405 Gene3D - 168 280 - -
Apr5g1885 405 PANTHER CYCLINS 64 400 IPR039361 -
Apr5g1885 405 CDD CYCLIN 183 272 IPR013763 -
Apr5g1885 405 Pfam Cyclin, C-terminal domain 282 398 IPR004367 -
Apr5g1885 405 PANTHER CYCLIN-B2-3-RELATED 64 400 - -
Apr5g1885 405 SUPERFAMILY Cyclin-like 281 398 IPR036915 -
Apr5g1885 405 CDD CYCLIN 280 367 IPR013763 -
Apr5g1885 405 Gene3D - 154 395 - -
Apr5g1885 405 SMART cyclin_7 286 368 IPR013763 -
Apr5g1885 405 SMART cyclin_7 189 273 IPR013763 -
Apr5g1885 405 SUPERFAMILY Cyclin-like 143 279 IPR036915 -
Apr5g1885 405 Pfam Cyclin, N-terminal domain 154 280 IPR006671 -
Apr5g1885 405 SMART Cyclin_C_2 282 399 IPR004367 -
Apr5g1885 405 ProSitePatterns Cyclins signature. 184 215 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1885 Apr-Chr5 21879002 21881547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1885 16 403 Core Cell Cycle Gene Families AT1G20610 55.294 9.23e-156 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1885 K21777 - gmx:100819848 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1885 5 21879002 21881547 Apr5g1885 5 21879002 21881547 ECH