Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1876 ATGGACTCTTTCTCTTTGGGGCTCTCTAGCAATATACTACATATTTTGTTTCTGAATTTGATTCAGGTGATAATGTTAATAAAAAGTTCTTTTCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCCATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAAATGCAGTAAGTACCCTGTTAACTGGTGTAGAAAAGCTGAACCAATGGAAGAAGATAGAAGGAACGCTGATGATCCCAACAGCTCAAGTTGTCCAATTAGCTCTGGTCGGCCATCAACTAATAGTATGATGACAGAAAATACTGCACCTAATATGGTCTACAGGAGAAAGAAGCTGCGTAAGGGCCCAATGTCTAAGCTAGGGCCAATTAATGTGCAGGGAAGTGCCAACAGCCCTTCAGTTATAAGTTCCTCTGCACATTTGTCATCAGCTGAGGATCAGCCGGCTGGTCTTCAAGTTAAGCATGACATTGAAATGGTTAAAGATCTTACTGAGCCTTCTGTCTTATTTGACAGAGTATCCAAAGATAGAACGCATAAAAACTTAGGTATTGACAGTGTAAATGATAGTTGCTCCTCTTCGAAGTCTATTACAGAACTTGATTCAGATTCCAATGAAACGGTGATGGATGAAGCTGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGATGCTACAAGGGAAGAGGGAACAGAAAAGGATTTCTGCATTAGTATTTTAAGAAGCCATGGACTTCTTAGAGAAAATTCTACTGCAGATAATGTGGCTTCTGGGGAAGATGCTGTCACCACTGGTAATAGCTGTTGTTCCAGGGCATGCAAAATATGTGGTCATTTAGACAGTTCATTGAACATGCTTTTATGTGATCAGTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGATGAATGGTTTTGTCATTCGTGTCTTAAAAAAAGGCAGAAAATTCTCAAGGAGACAGTTATCAGATCACCAGGTATCCACAATGAAATGGGAAAAAGTAGAACTTCCTCAGTTAAGGCTGAATTGAATCCCATAGTGTTGATGTTGCGGGACACAGAGCCACATACTAGTGGTGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGACTGGTCAGGCCCAATAAGAAGTGATGAAGATGTCCTTCCTGAACCATTGGAAATTAATCCTTCAGAATTTCCTAGTCTGCAGGGAGAGAATACGAGAAATCAAACTAGACTTAGTTCCATTGGTAATTGGCTTCAATGTCGGGAGGTTATAGATAGAGCTAGCGGAGCTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCACGCTGATTGTGCTGTACCTCAGGAGCTGGAAACGGATCAAGTAATGAAGCAACTGAAGTACATAGAAATGCTGCGGCCACGACTTGCTGCTAAACGGAAAAAATCTGACTGA 1542 0.4144 MDSFSLGLSSNILHILFLNLIQVIMLIKSSFLSSVEAGLCYVSDDGKDVPCDRMPSGETWQVCLKCSKYPVNWCRKAEPMEEDRRNADDPNSSSCPISSGRPSTNSMMTENTAPNMVYRRKKLRKGPMSKLGPINVQGSANSPSVISSSAHLSSAEDQPAGLQVKHDIEMVKDLTEPSVLFDRVSKDRTHKNLGIDSVNDSCSSSKSITELDSDSNETVMDEAGECSSSSVIVMDATREEGTEKDFCISILRSHGLLRENSTADNVASGEDAVTTGNSCCSRACKICGHLDSSLNMLLCDQCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPGIHNEMGKSRTSSVKAELNPIVLMLRDTEPHTSGVRVGKGFQAEVPDWSGPIRSDEDVLPEPLEINPSEFPSLQGENTRNQTRLSSIGNWLQCREVIDRASGAICGKWRRAPLFEVQTDDWECFCAIHWDPSHADCAVPQELETDQVMKQLKYIEMLRPRLAAKRKKSD* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1876 513 MobiDBLite consensus disorder prediction 134 156 - -
Apr5g1876 513 PANTHER HISTONE ACETYLTRANSFERASE 50 511 - -
Apr5g1876 513 PANTHER REMODELING AND SPACING FACTOR 1 50 511 - -
Apr5g1876 513 Pfam PHD-finger 284 330 IPR019787 -
Apr5g1876 513 Pfam ELM2 domain 379 490 IPR000949 -
Apr5g1876 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 348 IPR013083 -
Apr5g1876 513 MobiDBLite consensus disorder prediction 79 110 - -
Apr5g1876 513 MobiDBLite consensus disorder prediction 90 110 - -
Apr5g1876 513 MobiDBLite consensus disorder prediction 132 156 - -
Apr5g1876 513 SMART PHD_3 283 329 IPR001965 -
Apr5g1876 513 SUPERFAMILY FYVE/PHD zinc finger 270 333 IPR011011 -
Apr5g1876 513 ProSiteProfiles Zinc finger CW-type profile. 428 488 IPR011124 GO:0008270
Apr5g1876 513 ProSitePatterns Zinc finger PHD-type signature. 284 328 IPR019786 -
Apr5g1876 513 Gene3D - 432 497 - -
Apr5g1876 513 ProSiteProfiles Zinc finger PHD-type profile. 281 331 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1876 283 329 C2H2 Transcription Factor Family AT3G01460 42.553 3.27e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr5g1876 ELM2 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1876 - - aprc:113864532 1016.91