Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1866 ATGTTATCCATGGAGATTGATCTTGAGCTACCTATATGTGAGCACCAGAAGCTCAATACTGGATCCAACAGAAATGATGTTGCTAATACCGCATGTAGTATACATGTTGAGGAGCAAAGCATCAATCCTTCTTCAACGACTGAACACTATAAGGAAGTTTTAAGTGAAAATGCTTTCTGTTGCCTGGATCAGGTAGATTTGAATTCCAATCAAGTGGATGCTATTGATAAATTCCGCTTTAAAGAACCACAGAATGGCTTGGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCATTCAGTGGGATTTGGGATCACAATAAAAGCCAGTCGCCGCTCAAAAAAGTCGGGTAAATTTATTGATATTAAAATTGCCTGTTCCAGATTTGGAAGTAAGCGTGAGTCCGGTACAACTGTTAATCCACGACCATGTATAAAGACAGACTGTAAGGCTGGTATCCATATGAAGAAGAAGCTAGATGGTAACTGGATCATATACCATTTTGTAAAAGAGCACAATCATGAGATCTGTCCAGATGATTTTTTCAGGGGACGCAGCAAACAGACAAGTGATGTAACTTGTCAGAAGAAGGGTATGCAATTGGCACTAAATGAGGAAGATGTGCACGTGATGATTGAATATTTTGTGTCAATGCAGGGTGAAAATCCCAACTTCTTCCATGCAATAGACCTGGATCACAATAGACATTTGAGAAGTGTATTTTGGGTTGACTCAAAAGGCAGACTTGATTATCAATACTTTCATGATATTGTTTTGATTGACACATTTTACATGAAAAACAAATATAAAATTCCTTTTGTTCCTGTTGTGGGGGTCAACCATCACTTTCAGTACATTTTAATTGGATGTGCACTGGTTGGGGAGGAGACTGTTTCAGCTTTTACATGGTTAATGCGAACATGGCTCAAAGCAATGGGTAACCAACCACCAAAGGTGGTTATCACAGACCAAGAGAAATTCTTGAAAGAAGCTGTTGTAGAGGTGTTTCCAGACACACGTCATTGCTTCTGTCTATGGCATATTTTATGTAAAATCACCAAGAATTTGGATTATATTGTAAATGAAAATAACAATTTTATGGAAAATTTTGACAAATGTATTCATCATTCCTTTTCGGATGAGCAGTTTGGAAAGAGATGGTGGAAATTGATCAATAGATTTGAACTAAAGGATGATGAATGGGTTCAGTCATTGTATGAAGATCGTAAAAAGTGGGTACCCACATACATGCAAGATATTTCTTTGGCTGGATTGTCAACAACTGTAAGGTCAGAAAGTATATCATCGTCTTTTGACAAGTATATTTGTGTTGATTCTACCTTTAAGGAGTTTATTGAACAGTATAAAGTTTTCTCTTCAGACAGTTTTGACATGGAAACCAAAGCTGACTTTGAAACAAGACAAAAGCAACCAGCATTAAGATCTTTATTGCCTTTTGAGAAGCAGGTTTCTACAGTTTATACAGATGCCATATTTAGAAAATTTCAGTTGGAGATACTGGGAATGATGTCTTGTCATCTTGAGAAGGAAACAGAAGACATGGCATATGTAACATTTCTTGTTGATGATTTTGAGGAGCGGAAGAAATTTATTGTTTCTTGGAATGAAGCAGATTTGGATGTCTGTTGTTCTTGTCATTTATTTCAATACAAAGGTTTTCTATGTAGACATGCTATACTTGTCATTCAGAAGTCCGGCATGACCAACATTCCATCCCATTATATTTTGAAACGATGGACAAAAGATGCTAAGGCCAATCAATTTTCTGGTGACATAATTAGCAGGACTGCTAATCGAGTCCAACGTTTTAATGACCTTTGTAGGCGGGCTATTATATTAAGTGAAATTGGGTCTTTATCTGAAGATACTTATATTGTTGCATCTCATGCTTTGGAAGAAGTCTATAAGCATTGTGTGAATGCCAACAATTCTGCTAGAAGCACTTCAGATCCCCACAAGTTGGCCCTTAATGATTTTATTGATGTTGAAGAGAACTATGGTTGCCATAAGGCAAAGTCTACTAAGAAAAGGAAGTCATCTAATAAACAGAAATTGTCTGATCCAGAAAGAATCAATATCAAGATGCCCGATGATTTCGAAAAGAGGGAACAGAGAAATTCAAGAGGACAAAACTTTGATAATTGTCACATTTCTCAGCATGACACACAAACAGTGGACTTGGATTCTAGAGCTTCAACTCTTGATAGCTGTTATGAGGCAGAACAGAACATACTTGGAGACGCACAGCTGAACCCAGTTTCTGTCATGCATGCTGGCTATTTTACCAGTCAACAGGCCATTCTGGGGCTGGGGCAATTGCATTCCATGTCAAACCGTGGGTCACATTATGGGATGCAGCACAGCATGCAAGGACTGCAACACGGACAGCTTAATTTCAGAATGCCAACAGTGCAAGGGTGTTTTGACCTTCAAGATACTCTAGATGTTATGGAACAACCTATTAGGGCCTCACAGTTCCCTGTTATTACATCAAAGCAACTAGATGTTGATAAATCACTTTCCTGA 2562 0.3798 MLSMEIDLELPICEHQKLNTGSNRNDVANTACSIHVEEQSINPSSTTEHYKEVLSENAFCCLDQVDLNSNQVDAIDKFRFKEPQNGLEFESKEAAYSFYREYAHSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTTVNPRPCIKTDCKAGIHMKKKLDGNWIIYHFVKEHNHEICPDDFFRGRSKQTSDVTCQKKGMQLALNEEDVHVMIEYFVSMQGENPNFFHAIDLDHNRHLRSVFWVDSKGRLDYQYFHDIVLIDTFYMKNKYKIPFVPVVGVNHHFQYILIGCALVGEETVSAFTWLMRTWLKAMGNQPPKVVITDQEKFLKEAVVEVFPDTRHCFCLWHILCKITKNLDYIVNENNNFMENFDKCIHHSFSDEQFGKRWWKLINRFELKDDEWVQSLYEDRKKWVPTYMQDISLAGLSTTVRSESISSSFDKYICVDSTFKEFIEQYKVFSSDSFDMETKADFETRQKQPALRSLLPFEKQVSTVYTDAIFRKFQLEILGMMSCHLEKETEDMAYVTFLVDDFEERKKFIVSWNEADLDVCCSCHLFQYKGFLCRHAILVIQKSGMTNIPSHYILKRWTKDAKANQFSGDIISRTANRVQRFNDLCRRAIILSEIGSLSEDTYIVASHALEEVYKHCVNANNSARSTSDPHKLALNDFIDVEENYGCHKAKSTKKRKSSNKQKLSDPERINIKMPDDFEKREQRNSRGQNFDNCHISQHDTQTVDLDSRASTLDSCYEAEQNILGDAQLNPVSVMHAGYFTSQQAILGLGQLHSMSNRGSHYGMQHSMQGLQHGQLNFRMPTVQGCFDLQDTLDVMEQPIRASQFPVITSKQLDVDKSLS* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1866 853 Pfam FAR1 DNA-binding domain 97 182 IPR004330 -
Apr5g1866 853 SMART 26again6 553 580 IPR006564 GO:0008270
Apr5g1866 853 MobiDBLite consensus disorder prediction 692 721 - -
Apr5g1866 853 Pfam MULE transposase domain 262 354 IPR018289 -
Apr5g1866 853 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 40 759 - -
Apr5g1866 853 MobiDBLite consensus disorder prediction 682 727 - -
Apr5g1866 853 ProSiteProfiles Zinc finger SWIM-type profile. 540 578 IPR007527 GO:0008270
Apr5g1866 853 Pfam SWIM zinc finger 551 576 IPR007527 GO:0008270
Apr5g1866 853 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 759 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1866 Apr-Chr5 21741620 21747402 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr5g1866 MULE 1e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1866 - - gmx:100802811 1321.61