Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1865 ATGGTGGTTGGGCAGGCTCTTCTTCCTCCTCTTCCTCCTTCAAACTTGCTCTTCAAACGCTATCCAAGACACCTCTCTTTCTCCGCGTCTGCTTCCACCAATCACGCGCAAGACACCGCCAGAACTAACAACGCTGATGAGGATTCTTCGTCGACGAAACTATCCTCAAGCTTTGGAAGACTAAAGGCGCAGAAAGTGAAAGCTCTGGTCCATAGAACCAAGGAGCAAAGGGAACACACATTACCGAAATCTTTGGAAGAAGATGACGAGCATAGAGCCACAAGAGCAAGACATTTGAGAGGATGGGATAGGGTTTCCAATTCTCAGCCACAAAGGGAACACACAAAATCATCCACTGACATTAACTTTTTCAGTCTCAAGTCATTTAAAGAAATAGGATGCAGTGACTTCATCATTCAATCCCTTCAAAAACTGCTCTACACGCGCCCTTCACACGTGCAGGCGATGGCATTTGGACGTGTTCTTAGGGGAAAGACTTGTGTCATAGCTGATCAGAGCGGTTCTGGGAAGACTTTAGCATATCTTGCACCAATCATTCAGCGTCTTAGAGTGGAAGAAATAGAAGGGCGTAGTAAATCCTCTTCGCAAGCTCCTACAGTGCTTATACTCGCACCCACCGCTGAGTTAGCTTCCCAGGTCTTAGATAATTGTCGATCCATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACTGGGGGCTTTCGACAAAAAACTCAACTCGAAAATTTACACCAGGGTGTCGATGTCTTAATAGCTACACCTGGCCGTTTTTTGTTCCTCATCAAGGAAGGCTTCTTACAGTTATCAAATTTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGCGATGAGGATTTCGAAGTGGCTCTTCAATGCTTGATTAATTCTTCACCGGTTGACACACAATATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTGTTTCCTGATTGTGAAATGATCATGGGACCTGGTATGCACCGAATAAGTTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAATCTCCTGATACAGCGTTTTTAAACAAGAAAGCTGCTCTTCTGCATATTGCGGAGGAAAGTCCTGTCCCAAGAACAATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATTCATTAAAGCGTTTTGATAGAAAAGGAGCTCGCATACAAGTTCTCCCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTCACTCGTCCGCCATCAAAAGAAGTCTCCCAGTTTATGGTTTGCACTGACAGGGCATCACGGGGAATTGACTTCGCAGGAGTGGATCATGTCATACTTTTTGACTTCCCACGTGATCCAAGTGAATATGTGAGGCGTGTTGGAAGAACAGCGAGAGGTGCCAAGGGTGAGGGGAAGGCATTTGTCTTTGTGGTTGGCAAACAAATATCCCTTGCTCGCAAGATAATGGAAAGAAATCGGAAAGGTCACCCACTACATGATGTGCCTTCTGCTTATTAG 1593 0.4413 MVVGQALLPPLPPSNLLFKRYPRHLSFSASASTNHAQDTARTNNADEDSSSTKLSSSFGRLKAQKVKALVHRTKEQREHTLPKSLEEDDEHRATRARHLRGWDRVSNSQPQREHTKSSTDINFFSLKSFKEIGCSDFIIQSLQKLLYTRPSHVQAMAFGRVLRGKTCVIADQSGSGKTLAYLAPIIQRLRVEEIEGRSKSSSQAPTVLILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQKTQLENLHQGVDVLIATPGRFLFLIKEGFLQLSNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKSPDTAFLNKKAALLHIAEESPVPRTIVFCNKIETCRKVENSLKRFDRKGARIQVLPFHAAMTQESRLASMEEFTRPPSKEVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGEGKAFVFVVGKQISLARKIMERNRKGHPLHDVPSAY* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1865 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 339 IPR014001 -
Apr5g1865 530 MobiDBLite consensus disorder prediction 70 117 - -
Apr5g1865 530 CDD DEADc 138 325 - -
Apr5g1865 530 MobiDBLite consensus disorder prediction 70 110 - -
Apr5g1865 530 Gene3D - 349 524 IPR027417 -
Apr5g1865 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 503 IPR027417 -
Apr5g1865 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Apr5g1865 530 SMART ultradead3 146 354 IPR014001 -
Apr5g1865 530 Pfam DEAD/DEAH box helicase 152 325 IPR011545 GO:0003676|GO:0005524
Apr5g1865 530 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 528 - -
Apr5g1865 530 Pfam Helicase conserved C-terminal domain 376 491 IPR001650 -
Apr5g1865 530 Gene3D - 80 339 IPR027417 -
Apr5g1865 530 CDD SF2_C_DEAD 351 502 - -
Apr5g1865 530 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 528 - -
Apr5g1865 530 SMART helicmild6 402 492 IPR001650 -
Apr5g1865 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 374 530 IPR001650 -
Apr5g1865 530 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1865 Apr-Chr5 21737714 21740493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1865 126 513 Eukaryotic Initiation Factors Gene Family AT3G19760 26.531 1.16e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1865 K13179 - gmx:100780849 778.089