LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1858	ATGGCTGATCCACAGTCACAGCCTCTGCTCCTCAACGATTCCGAGCCTCCCACTCAGTTCCAAAACGCCCGACCCACCCGAATAGCCTCCGTCGACGTCTTCCGCGGCCTCTCTGTTTTTCTTATGATCCTGGTCGACTATGTGGGCTCCATCTTGCCTATCATTGCCCATGGCCCCTGGAATGGGATTCACTTGGCTGATTTTGTCATGCCGTTTTTTCTCTTTATTGCTGGAATCTCTCTAGCCCTTGTTTATAAGAGAAGGCCTCAGAGAACCGAAGCTACATTGAAAGTTTTAGCTAGAGCAGCGAAACTCTTTATTCTTGGTATTGTTCTTCAAGGTGGTTATTTTCACGGGATAACTTCCTTGACTTATGGTGTTGACATTGAAAGAATTAGATGGATGGGCATTTTGCAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGTGAGATCTGGCTTCCAGCTCCAAGGTGGAAAGAATTAGGTTTCTTCAGAAGTTATTACTGGCATTGGTTTGTAGCTGTAATATTGTTGGCACTTTACTCGGGATTATTGTATGGCCTATATGTTCCAGATTGGCAGTTCGATGTATCAGCCTCAACCTCTTCATTGCCTCCAGTGAATTGTTCGGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCCGGAATGATTGATCGCTATTTTCTCGGTCTTAACCATCTATACCGAAAGCCTGTTTACAGAAATCTTAAGGAGTGCAATATGTCTGGTAAGGGGCAAGTTTCAGATAGCTCGCCTTCATGGTGTTATGCTCCTTTTGATCCCGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCATGCATAATTGGACTACAATATGGTCATGTTCTAGCCCATCTTCAGGATCACAAAGGGCGCCTAGACAACTGGATGTGTTTTTCAGTTTCATCTTTGGCCCTCGGATTTTTCCTGGCCATAATAGGAGTTCCTCTAAATAAATCTCTGTACACAGTCAGTTATATGCTACTAACTTCGGCAGGTTCTGGTCTCACATTCATCGCTTTATATGTTCTGGTAGATGTTCGTGGTTACAGGCGTTTGACAAGTGCGTTGGAATGGATGGGAAAGCACTCCTTGAGTATATTTGTCCTTGTATCTTCAAACTTGGCCGTTATTGCTATTCAAGGATTTTATTGGACAAAACCCGAAAACAACATTGAAGTCACCGAAGAAGGCCACCAAAGGAAAGACTACGTAGACCCTCCCCCAGCGCCTCTCATCGACCTCGCCGAGGTTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATAGCCACCCTCCTCTTCCTCTATGTCACTGTCGCCACCGTCATCGGTCACAAAAAACAATCCGGGCCTTGCGACGGTGTTGGCCTTCTCGGCATCGCATGGGCCTTCGGCGGCATGATATTTGTCCTCGTTTACTGCACCGCCGGTATCTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGGCTGTTCCTGGCTCGGAAGGTGTCTCTGATAAGAGCTGTGCTGTACATGGTAGCACAGTGTCTGGGTGCTATCTGTGGTGTGGGGTTGGTGAAGGCCTTCATGAAGCACCCCTACAACTCCCTCGGTGGCGGTGCTAACTCCGTGGCACCTGGCTACAACACAGGCACTGCCCTTGGTGCTGAGATTATCGGAACTTTTGTGCTTGTCTACACCGTTTTCTCGGCCACAGACCCCAAGAGAAGCGCCCGTGACTCCCATGTCCCCGTTTTGGCCCCCTTACCAATTGGCTTTGCGGTTTTCATGGTTCACTTGGCTACCATACCCATCACTGGAACCGGGATAAACCCCGCTAGGAGCTTCGGTGCTGCCGTCATCTACAACAATGGCAGAGTTTGGGATGACCATTGGATCTTCTGGGTTGGGCCATTCGTGGGAGCGTTGGCAGCAGCTGCATACCACCAGTACATACTGAGAGCAGCAGCAATCAAGGCGTTGGGATCATTCAGGAGCAACCCCACCAACTAG	2037	0.4855	MADPQSQPLLLNDSEPPTQFQNARPTRIASVDVFRGLSVFLMILVDYVGSILPIIAHGPWNGIHLADFVMPFFLFIAGISLALVYKRRPQRTEATLKVLARAAKLFILGIVLQGGYFHGITSLTYGVDIERIRWMGILQRISIGYIVAALCEIWLPAPRWKELGFFRSYYWHWFVAVILLALYSGLLYGLYVPDWQFDVSASTSSLPPVNCSVRGDLGPACNSAGMIDRYFLGLNHLYRKPVYRNLKECNMSGKGQVSDSSPSWCYAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKGRLDNWMCFSVSSLALGFFLAIIGVPLNKSLYTVSYMLLTSAGSGLTFIALYVLVDVRGYRRLTSALEWMGKHSLSIFVLVSSNLAVIAIQGFYWTKPENNIEVTEEGHQRKDYVDPPPAPLIDLAEVKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQSGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANSVAPGYNTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGRVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN*	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1858	678	ProSitePatterns	MIP family signature.	496	504	IPR022357	-
	Apr5g1858	678	SUPERFAMILY	Aquaporin-like	428	662	IPR023271	-
	Apr5g1858	678	PANTHER	LD22376P	5	406	-	-
	Apr5g1858	678	PRINTS	Major intrinsic protein family signature	436	455	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	PRINTS	Major intrinsic protein family signature	478	502	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	PRINTS	Major intrinsic protein family signature	515	534	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	PRINTS	Major intrinsic protein family signature	564	582	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	PRINTS	Major intrinsic protein family signature	600	622	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	PRINTS	Major intrinsic protein family signature	640	660	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	PANTHER	HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE ISOFORM X1	5	406	-	-
	Apr5g1858	678	MobiDBLite	consensus disorder prediction	1	21	-	-
	Apr5g1858	678	Pfam	Heparan-alpha-glucosaminide N-acetyltransferase, catalytic	27	151	IPR012429	-
	Apr5g1858	678	Pfam	Major intrinsic protein	429	656	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	TIGRFAM	MIP: MIP family channel proteins	440	656	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	CDD	MIP	436	660	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Apr5g1858	678	Gene3D	Glycerol uptake facilitator protein.	421	678	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1858	Apr-Chr5	21674405	21682139	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g1858	404	678	Major Intrinsic Protein MIP	AT2G16850	91.273	1.13e-179	510

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1858	-		-	vra:106761912	1216.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g1858	5	21674405	21682139	Apr5g1858	5	21674405	21682139	ECH