Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1853 ATGACAGTTGAAAGGAGATATGTTTTGGTGGGAATTAGAATGGATGGCCATAGCAGACAATTGCTGAACTGGGCTCTCGTTAAAGTTGCTGAACCTCATGATTCTGTTATTGCACTCCATGTAGTTAGAAGTGCAGATTATGTTTCCAAAAGGAAGCTCTTGGTGGAGGGTTATTTCGACGTTTATAAAGGGTTATGCGACGTGAAAAAGGTAGGTCTCTCCTGTCAGATCTTGACAGGAAGTTCCTTTCGAAATATTCTTGTTAGAGAGGCAAAAAACTGTGCTGCTATGGCTCTAGTGGTAGGGGGTGGAGCTTCCACGGCTAAATATTGCGCCAAACGACTACCACCCACCACCAATGTTCTGGCAATCCAAGGTGCGAAAATTGTCTTCAGAAGGTTCACCGATGAAAAACTACCAGGTGGTCTCATAGAGGATCCTAGACCAAGCCTTAGTACAGTGGTTTTTTCTGAATTTGGTGACTCCAAGGTGGAGAGTGAGAAATTAACTCGCGATGATAGCAGAGAATTGGAGGAAGATGCATATAAAGGAGCACAAAGTTGCATGAAAGTGTTGGGTGACCCCTCAGAGCAGAAGCTTGGGTGGCCACTTCTCCACAGGGCCTATACAGAAATCTCACAGACCCATCATGTAAGGGACATGCCTGTTGTGCAATGGGTAATGAGCTTACCAAATCGTTCACCGAAGAAAAATCAGCACTGTTCGACCATTGACGACAATTCATCCGAAAGGGGCATTAATGACAACGAAGATGAGAGCTACAAAAAAATTTCAGCTCCATCTGTTGAACTGCCAAAGAGTCTGGAAAGGGTTTTAAACGTTAATACATTCAGTTGCAGGTGGTTCAGCATTGAGGTTCTTAAGTCTTGCACTTGTCAATTCTCTTCAGAAAATTTGATTGGGAAAGGAGGGAGCAACCGTGTGTACAAAGGAATCCTCCCTGATGGGAAGCCAATTGCAGTCAAAGTTCTGCAGTCATCAAAAGTAGCCTTGAAAGATTTTGCCCGTGAGGTGGAAATAATATCCTCATTAAAGCACAAAAGCATCACCCCTCTACTTGGGATTTGTGTTGATGACAGTGCGTTCATCTCTGTTTATGATTATTGCCCCAAAGGAAGCTTAGAGGAAAATCTACACGGCAAGACCGAGGATGGTTCATTCTTGTCATGGGAAGTCAGATTTAATGTAGCTGTTGGGATTGCTGAAGCACTCAATTTCCTACACAATGAAACTTCGAAGCCCATTATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCTATGGGTTTGAGCCACAGTTATCTGATTTTGGGCTTGCCATACGGGGACCAACAACTTCATCTTTTATGACTCATAACGACGTAGTAGGAACTTTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGACGTCTATGCCTTTGGTGTAGTGCTACTTGAACTAATATCAGGAAGGGAACCTATCAGCTCTGAGACTTGCAATGGACAGGAGAGCTTGGTCGCGTGGGCAAAACCAATATTAGAAAGTGGTGATGTTGAAGGTTTATTGGATCCAAATTTACAAGAGAAGTTTGATGAGGCTCAAATGCAAAAGATGGTTCTGGCAGCATCTCTGTGCATTAGACGGGCTGCACGGCTACGTCCAACATTGAATCAGATTTTGAATATATTAAAAGGATACGACGGGAAAGTTGAAAACTTCTTCAACGCCTACCAGAATGATTCTGAAAATCAAGAAAATATTGATGACGAAGTCTATCCAAATTCAAGTGCAGATTTGCACCTGAGCCTGGCATTACTTGATGTGGACTATGACACTGCATCAAATAGCAGTACAGTCACCACAGAGCACACAATGATGAACATTTGA 1914 0.4269 MTVERRYVLVGIRMDGHSRQLLNWALVKVAEPHDSVIALHVVRSADYVSKRKLLVEGYFDVYKGLCDVKKVGLSCQILTGSSFRNILVREAKNCAAMALVVGGGASTAKYCAKRLPPTTNVLAIQGAKIVFRRFTDEKLPGGLIEDPRPSLSTVVFSEFGDSKVESEKLTRDDSRELEEDAYKGAQSCMKVLGDPSEQKLGWPLLHRAYTEISQTHHVRDMPVVQWVMSLPNRSPKKNQHCSTIDDNSSERGINDNEDESYKKISAPSVELPKSLERVLNVNTFSCRWFSIEVLKSCTCQFSSENLIGKGGSNRVYKGILPDGKPIAVKVLQSSKVALKDFAREVEIISSLKHKSITPLLGICVDDSAFISVYDYCPKGSLEENLHGKTEDGSFLSWEVRFNVAVGIAEALNFLHNETSKPIIHRDVKSSNILLSYGFEPQLSDFGLAIRGPTTSSFMTHNDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSETCNGQESLVAWAKPILESGDVEGLLDPNLQEKFDEAQMQKMVLAASLCIRRAARLRPTLNQILNILKGYDGKVENFFNAYQNDSENQENIDDEVYPNSSADLHLSLALLDVDYDTASNSSTVTTEHTMMNI* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1853 637 CDD USP_Like 8 116 - -
Apr5g1853 637 Pfam Protein kinase domain 302 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1853 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Apr5g1853 637 PANTHER OS08G0249100 PROTEIN 3 624 - -
Apr5g1853 637 MobiDBLite consensus disorder prediction 234 256 - -
Apr5g1853 637 Gene3D Transferase(Phosphotransferase) domain 1 376 600 - -
Apr5g1853 637 SMART serkin_6 301 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1853 637 SUPERFAMILY Protein kinase-like (PK-like) 281 572 IPR011009 -
Apr5g1853 637 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Apr5g1853 637 MobiDBLite consensus disorder prediction 239 256 - -
Apr5g1853 637 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 3 624 - -
Apr5g1853 637 ProSiteProfiles Protein kinase domain profile. 301 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1853 Apr-Chr5 21654908 21658022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1853 288 572 Trihelix Transcription Factor Family AT5G38560 43.151 7.23e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr5g1853 Pkinase 5.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1853 - - lang:109355495 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1853 5 21654908 21658022 Apr5g1853 5 21654908 21658022 ECH
Apr5g1853 5 21654908 21658022 Apr1g0427 1 5278255 5281953 ECH