Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1847 ATGGGAAGGTCCCCTTGCTGCGAGAAAGCCCACACAAACAAGGGCGCCTGGACCAAAGAAGAAGACGATCGCCTCATAGCTTATATTCGAGCACACGGCGAGGGGTGTTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGCTGCGGCAAGAGTTGCCGCCTCCGTTGGATCAACTATCTCCGCCCTGACCTCAAACGTGGCAATTTCACCGAAGAAGAAGACGAACTCATCATCAAACTCCACAGCCTCCTCGGCAACAAGTGGTCTCTAATAGCTGGAAGATTGCCCGGTAGAACAGACAATGAGATAAAGAATTATTGGAACACTCACATAAGAAGGAAGCTACTGAGCAGAGGAATTGACCCTGCAACTCATAGGCCTCTCAACGACCCTTCTCCTTCTCCAAATCACAATAATAAAGAAGCTGCTGCCGCTGCCGCCGCCGCCGCCGCCACAATATGTTTTGCTGCTAAACAAGAGGAAAAGGACAATACCAACGCGTGCGTGTTCGTCGAGAATAAAGATTCCAAAGGACCCACTTTGGAACGCTGCCCTGACTTGAATCTTGAGCTGACAATTAGTCCTCCTCGTCAGTCTCAGTCTCAGTCTGATCAGCCATTGAAGAGAACCCTTTGCTTTTCTTGCAGTTTGGGTTTGCAGAATAGCAAGGATTGCAGCTGTGGGATTAACGCTGCTAGTGCCAACGCCCCTTCTTCTGGTTATGATTTCTTGGGCTTGAAAACCCGCGTCTTGGATTACAGAAGCTTGCAAACCAAATCAAATTACTCAAAGAACTAA 801 0.4981 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDPSPSPNHNNKEAAAAAAAAAATICFAAKQEEKDNTNACVFVENKDSKGPTLERCPDLNLELTISPPRQSQSQSDQPLKRTLCFSCSLGLQNSKDCSCGINAASANAPSSGYDFLGLKTRVLDYRSLQTKSNYSKN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1847 266 SMART sant 13 63 IPR001005 -
Apr5g1847 266 SMART sant 66 114 IPR001005 -
Apr5g1847 266 CDD SANT 69 112 IPR001005 -
Apr5g1847 266 CDD SANT 16 61 IPR001005 -
Apr5g1847 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr5g1847 266 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr5g1847 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr5g1847 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr5g1847 266 MobiDBLite consensus disorder prediction 121 143 - -
Apr5g1847 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr5g1847 266 Gene3D - 14 66 - -
Apr5g1847 266 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 233 - -
Apr5g1847 266 Gene3D - 69 144 - -
Apr5g1847 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr5g1847 266 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Apr5g1847 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1847 Apr-Chr5 21612372 21613516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1847 1 260 MYB Transcription Factor Family AT4G38620 58.966 1.18e-110 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g1847 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1847 K09422 - csin:114311392 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1847 5 21612372 21613516 Apr5g1847 5 21612372 21613516 ECH