Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1836 ATGGACAGTGAAGAGGATGGGGGATGTTGGGTCTTGGAGTTTCTTCTTGGGAACCCACTCGTTGAAAGTAACCTGATCAAGAAAGTGCTTTGGAAAATCACCGTTCCAAACGCTGATTCCCGCCTCAAGAAAACCATTCTCCTCAAAACCCTTCAACACTACTTGTCCACAGTCTCTATTGCCGAATCCATTCTCCAAACACTCGAAATCCTCGAGGAACTCCTCCGTCTCGAGGGTTCTCCGATCACCGCTGCCATGAGCGCCGCCTATTGCGCCGTCGCGGTCGAGTGCACTCTCAAGTACCTCCAACTGGAACTCAACGACAACCCTGCCTACCACGGAGCCGTCGAGAGGATATGGCGCGGTAGGGTTCGCTGGATGGACCCTTCAATGAACGCTTCCCGTGAAGGAAGCCTTCTGTTCTCCGCCGAGTTGAAGCGGTGGAGAAATGACATTGAGGCTTCCCTTTTGGACTCGCGCTTGAGGGAGAGGCTGGCCTCCAGTCGTACCAGAAGAAACGCCGTTCGTAAGCTTAAGGTTTATTTGGCCGAAGCAATGCAAAATCTGGGTCCTTCCTTTCTCGAGGTAGCGGCGTCGATGCCTGCAAACAATGGTAGGATCGATGCTGTTGAATCAATGAGGGCAGAAGATGATGGTATTGATGCTGAAACGAGACGAGCTTGTAGTGGTACTCATGAATTGACTCACCCAAAGAGAGTAGAAATTCAGAGGGACAATAAGCTGTTTGAAGCCAAGGGTACTAGTGTTGCTGCTGAGGAAGCGGGTCCATCAACAAGTCGTTGCAAAAATGACTCTGTGCCGAAAGGGGCATGTGTTGCCACTCATGTAAACCATGAATTGACTCACCAAGAGAGAGTTGCAGTGTCTCCCGTAGAAATTCTGAAGGACAATAAGCTGTCTGAAGCCAAGGATACTGGTACCGGTGCTGAGGAAGTGAGTCCATCAACAACTTGTAGCAAAGTTGACTCTGCTACGAATTGTGAAGTTCAAAAGGCTGGGGAATCTCATGAAGTTGAGGATCCTATACTTAATTCCTTGCACATGTCTGGCAATGCAAGAGCTGAATTGGCAAAGAAAGACATGAATCAAGAGCCGCCTATTGAAAACCAGAGCAGAGATGCAGATGTATCTTTTCCTCGGACTGGCCAGCGTATTAATAATAATGATGATAACCTGAACGAGGGAACTTCTGTCCCTCAGAAGGGTGATCAGAGGCCAAGCTTGATGGAAAAAAATAACACTGCTTGTACTTATGAGTGGAATGATGCGATAGATGGCTTGCAGGGAGGAACATCAAATCCTGAAAGTAGATTTCATTTCCCTAGCCCAAAGAGGAGGAAACTTTCTCCATTGAAGAAGTATGAACCAGCTAACATTACAAGAAGGAGAAAACCAAAAAAATGGAGTGTGTTGGAAGAGCAAACATTACGGACTGCTGTGGACAAATTTGGCAAGGGAAATTGGAAACTCATCCTAAATTCTCACAAAGATATATTTGAAGATAGAACCGAAGTTGATTTGAAGGATAAGTGGAGAAACATGATGCGCTATGGATGCAAATGA 1584 0.4678 MDSEEDGGCWVLEFLLGNPLVESNLIKKVLWKITVPNADSRLKKTILLKTLQHYLSTVSIAESILQTLEILEELLRLEGSPITAAMSAAYCAVAVECTLKYLQLELNDNPAYHGAVERIWRGRVRWMDPSMNASREGSLLFSAELKRWRNDIEASLLDSRLRERLASSRTRRNAVRKLKVYLAEAMQNLGPSFLEVAASMPANNGRIDAVESMRAEDDGIDAETRRACSGTHELTHPKRVEIQRDNKLFEAKGTSVAAEEAGPSTSRCKNDSVPKGACVATHVNHELTHQERVAVSPVEILKDNKLSEAKDTGTGAEEVSPSTTCSKVDSATNCEVQKAGESHEVEDPILNSLHMSGNARAELAKKDMNQEPPIENQSRDADVSFPRTGQRINNNDDNLNEGTSVPQKGDQRPSLMEKNNTACTYEWNDAIDGLQGGTSNPESRFHFPSPKRRKLSPLKKYEPANITRRRKPKKWSVLEEQTLRTAVDKFGKGNWKLILNSHKDIFEDRTEVDLKDKWRNMMRYGCK* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1836 527 Pfam Myb-like DNA-binding domain 473 521 IPR001005 -
Apr5g1836 527 ProSiteProfiles Myb-like domain profile. 467 522 IPR001005 -
Apr5g1836 527 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 467 526 IPR017930 -
Apr5g1836 527 PANTHER MYB TRANSCRIPTION FACTOR 8 524 - -
Apr5g1836 527 SUPERFAMILY Homeodomain-like 474 525 IPR009057 -
Apr5g1836 527 MobiDBLite consensus disorder prediction 433 459 - -
Apr5g1836 527 CDD SANT_TRF 473 523 - -
Apr5g1836 527 MobiDBLite consensus disorder prediction 367 415 - -
Apr5g1836 527 Gene3D - 475 527 - -
Apr5g1836 527 PANTHER MYB TRANSCRIPTION FACTOR 8 524 - -
Apr5g1836 527 MobiDBLite consensus disorder prediction 374 415 - -
Apr5g1836 527 SMART sant 471 524 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1836 Apr-Chr5 21545378 21556615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1836 429 522 Single Myb Histone (SMH) Gene Family AT1G15720 44.681 1.32e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr5g1836 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1836 - K11111 aprc:113864424 1035.02