Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1813 ATGGACGAGGAAGAGTCTGGTAAAGGAGTGGCTGAGCAAACCCCAGAGCAAATGGTCGCCAGGGCCATAGCCCCTGTCAAGAAGGACTTCCTTCGCCCTCCTCCCGTTCGCGCCTCCTCTCCAAATGACGATGTTTCCATTCCCAACGATAACAAAACCTCTGTTCTGGCGAAGGAGAAGAAATCTAAGCGCCAGCTCAAACGCGAACGTCGTCAGGAACAAAAGTCCGCACGAAACCTGTGTCCGGAAATTGCAAAGACAGGGGATGTTAATTCCTGTCCTTATAAAGACAAGTGTCGTTTCAGTCATGATTTAGAAGGCTTTAAGGCACAGAAACCTGGTGATCTAGAGGGAGAATGTCCCTTCTTTAAATCTGGAGGCTCTTGTCCTTATGGATTAGCATGTAGATTTTCAAGTACGCACCATGATGGTGTGCCTTCTGCGAATCTGAATGGTCTGAAGAAAGGTTCCGAGGTGAATGGATTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGATTCCTCAAGGCTGATACCCAACTCAAAAGTCTTTCCCTCTCGGTGCCCCATAGATCAAAAAGGAATGACTTGGAAAGTAAAGATGGCGATGATTCTGGTTCAAATAAGTGTATTCAGTCTGATGACAGTGGCTCTTGTGTTGTTACCTCTGAATCAGGTCCCAAGTTAGAATGCCCTGCAGAAGCTATAAAAGATGATGACATAGATGGAAATTTTAAATCTGATGTACTTTGTCCCCAGAAGAGAAGAAAAACTACAGAAAATTGTGGTCCTCACGAGACAGAAAATGAAGGTCATACCTTCATCTTTGACTCTTGTGTGAGTGTTACTGAGCAAATTGTTGACATAAAATCTGAACAGGAAGCTGGAACTGATGCTATAGCCCCAGAAAACGATCTAAGCCTGAAGTTGCATGCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCGCCCTTGACTACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCGGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCCTCAGAATGGGCATTGCTGAGACGTCATTCTTCTGAAAATTTATTTGGTGTACAAATCTGTGGGGCATATCCTGATACTGTGGCACGAACAGTTGAACTAATAGAGCAGGAATGTACAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGATATCGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTAACAAAACCAATGCGGATGAAAAGTATTGTAGAAGTAGCTTCAGGCACAGCAGATAAACCAATAACTGTCAAGGTACGAACAGCATATTTTGAAGGGAAGAATCGCATTGATTCTCTGATAGAAGACATTGGCTCTTGGGGAGTCAGTGCCGTGACAATACACGGTAGATCACGTCAACAACGATATAGCAAGCTTGCTGACTGGGACTATGTATATCAATGTGCCAGGAAAGCCCCTAAAATGTTGCAAGTAGTGGGAAATGGTGATGTGTTTTCATTTGTAGACTGGAACAACCACAGAACTAAATGCCCTGAACTTGCTACATGCATGATTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGCGAGCGTCTAAATATTCTCAAGGATTTTGTGAATTTTGGCCTTGAACATTGGGGTTCTGACACAAAAGGAGTTGAGACAACCCGGCGTTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTATATACCTGTTGGTCTTTTGGATGTTGTTCCACAACGAATAAACTGGCGCCCACCATCTTACCATGGTCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCAGCTGATTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTACATTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGCTGA 2037 0.4325 MDEEESGKGVAEQTPEQMVARAIAPVKKDFLRPPPVRASSPNDDVSIPNDNKTSVLAKEKKSKRQLKRERRQEQKSARNLCPEIAKTGDVNSCPYKDKCRFSHDLEGFKAQKPGDLEGECPFFKSGGSCPYGLACRFSSTHHDGVPSANLNGLKKGSEVNGLSKDVQKLLWKNKMRFLKADTQLKSLSLSVPHRSKRNDLESKDGDDSGSNKCIQSDDSGSCVVTSESGPKLECPAEAIKDDDIDGNFKSDVLCPQKRRKTTENCGPHETENEGHTFIFDSCVSVTEQIVDIKSEQEAGTDAIAPENDLSLKLHAREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSENLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTADKPITVKVRTAYFEGKNRIDSLIEDIGSWGVSAVTIHGRSRQQRYSKLADWDYVYQCARKAPKMLQVVGNGDVFSFVDWNNHRTKCPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYHGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1813 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 18 678 - -
Apr5g1813 678 Pfam CCCH-type zinc finger 80 104 IPR041367 -
Apr5g1813 678 ProSitePatterns Uncharacterized protein family UPF0034 signature. 410 428 IPR018517 GO:0008033|GO:0017150|GO:0050660
Apr5g1813 678 ProSiteProfiles Zinc finger C3H1-type profile. 119 144 IPR000571 GO:0046872
Apr5g1813 678 ProSiteProfiles Zinc finger C3H1-type profile. 75 106 IPR000571 GO:0046872
Apr5g1813 678 Coils Coil 56 76 - -
Apr5g1813 678 MobiDBLite consensus disorder prediction 1 80 - -
Apr5g1813 678 Pfam Dihydrouridine synthase (Dus) 329 563 IPR035587 -
Apr5g1813 678 MobiDBLite consensus disorder prediction 189 219 - -
Apr5g1813 678 Gene3D Aldolase class I 321 564 IPR013785 -
Apr5g1813 678 SUPERFAMILY FMN-linked oxidoreductases 326 639 - -
Apr5g1813 678 MobiDBLite consensus disorder prediction 192 211 - -
Apr5g1813 678 Gene3D - 70 148 - -
Apr5g1813 678 CDD DUS_like_FMN 326 561 IPR035587 -
Apr5g1813 678 SMART c3hfinal6 76 105 IPR000571 GO:0046872
Apr5g1813 678 SMART c3hfinal6 116 143 IPR000571 GO:0046872
Apr5g1813 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 18 678 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr5g1813 Dus 1.1e-48 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1813 K05544 - gmx:100783494 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1813 5 21405028 21410626 Apr5g1813 5 21405028 21410626 ECH