Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1804 ATGGATGCCGACGACGACGAAGCTCAACTCCCAAAACACTCCCCACAATGCCACGCTCGCCTGCAAAATCTTCCCGACGCCGCCGTAGGGGATTTTCCGCCGGCACAGCTCCACGCCGGAGACCTTGAGGCTGTGACCGCGGAGTTGAGTGAAGCCAACGCCGATGCGACGAAGGAGAAGGGAACGGGGAATGAAGGAACCGATGCGGCTTTGGAGACGGAGAAGGTGGAAGGCGAAGGGAGTTTCCCAATTCATAAGGAAGAGACCGAGGATGGGAAGATGAATGAAGGTGCTTTGATGGAACAAGAAGAAGAACGCCAAGAAGACGATGCTTTGTTAGAACACGAAGAAGAACGCCAAGAAGATGACGCTTTGTTGGAACACGAAGAAGAACGACAAGAAGATGAGGCTTTGTTGGAACAAGAAGAACACCAAGAAGACGATGCTTTGGTGGAACAAGAAGAGGAAGAACAGCAAGAGGACGAGGCTTTGATGGAACAAGAAGAAGAGCACCAACAAGTAGAAGAAGAAGAGGAAGAAGAAGCTGGTGCTGATGGGGATGGTGGTATGGCAATGGCAGAAGATACAGAGGGTGCAGAGGAGATAGAGGAGGAGAAGAGTGCGAGTGTCAGTGGTGGGAAGAGGAAGCGTGGGGCTGGGAAGAATGCTAAGTCTACAGGGAGAGTTGCATCCAAGAAAAAGATGGAAGAGGACGTTTGTTTTATTTGCTTTGATGGGGGTGACCTTGTGCTTTGCGATCGCAGGGGATGCCCCAAGGCCTACCATCCTTCTTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAAAGGAATGCATACTATATGTGCTATACATGTACATTTTCTTTGTGCAAGGTATGCATCAAAGATGCTGTTATCTTATGTGTTAGAGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACCGTGATGTTGATTGAACAGAATGAACAAGGAAACAATATGGGGCAAGTAGATTTTGATGACAAAAACAGCTGGGAATATCTCTTCAAGGACTACTACATAGATCTGAAAGAAAAACTATCTCTAACATTTGATGAACTAACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCCTTCAAAAGAGGAATCACCGGATGAACTTTTTGATGCCAGTAATGATAGAGGATCAGATTCAGATAGCTCATATGAGAATGTAGATTTGAATCATTCTAAAAGAAGAAAGGCCAAGAAAAGGGCAAAGTCCCATTCCAAAGAAGGTAATTCATATAGTGCTGTGAGAATGCTTGGTGCTGATGGGCCATCTGGAGATGACAGCTCTGACTGGGCTTCGAAAGAGCTTTTGGAGTTTGTCATGCACATGAGAAATGGAGACAAATCTGTTTTGTCTCAGTTTGATGTCCAGGCTCTTCTGCTAGAGTATATTAAAAGAAATAAACTTCGAGATCCACGCAGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGTAAACCAAGAGTAGGACATTTTGAAATGTTAAAACTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATTAGTCATTTGGAAGGTGATGGGAATCCCAATTCATATGTCAAAGCTGGCAAAGATAAGAAACGCAAAAATCGTAAGAAGGGTGATGAGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACCGAGAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGGCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCGATTGATATTATCTCTAACCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGTCAAAGCATAAAGTGTGGCCTCATAAACCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGATACTTCAGGCTGTTAGAGTAAAAGATTGGCTCGAAACAGAGATAGTGCGGCTGAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTGTTGAAAACACCAGAAGAACGTCAACGGAGACTGGAGGAGATTCCAGAAATACATGTGGATCCAAATATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCTGCTGCCTTTGGAAGGAGGGGGAGAGAAATTGTTTCTCCTAGAAGTGGTTCTATTTCAAGTGATCCTTGGAGTGGAACAAGGAATTATTCTAACGTGAATCAGGAACTTAGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTACTGAGGTACTAAATGATGTTCAATTGCACCTGGGAAGAGACAGAGAATCTCAACTATCCAATAGCTGGGAAAGGCAAAAGCTATCTTCAAGCTTGGAAAGTGGTGCTAAAACTACCCAATCATTGGTAACATCAGAGCCTTTTTCTACTGCTGTGTTAGAAGCTTCTGCAGCACCATCTTCTGCTGGAATAGCTCCCCCAGCTGTGAAAATTAATGAAACAGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGCTACGTAAATGGAGTAACACAGGATATTTTCCTGCTGATTTGAGGATTTGGAGAAGCACTGAGAAGCAGGATGAATCTATACTCTTAACGGATGCCTTGGCAGGGAAGTTTTCTAAAGAACCATCAATGGTGGATAAGGCCCAAACGGTGCATGATTTACATTACTCATCCTCATTCTCTAGGAAGTCTGCACAACAGGGTATAGAAGGTCAAGTCGGAGAAAGGCCAACATTTGATCAAAATAGTGGATCTTGGAATTCACATGGTACTCTGGGTTCTCCTGGACAAACCAATGGAGGAAGTTGGAGATCTAAAGATAATATGATTTCTTTAGCAAGTAGAACTCCATTAGCAGTTGAGGTCCCGAAAAACCCAGCAAATGGCTGGGGGTCTGATACTGGTGTTAGAAATGAATCAACAAATCTTCCTTCACCTACTCCCCAGGTTACTCCTGGTGGGACTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGGTGGCTGGGTCTCTCTTAGGCAATTCATTCCCAGGCGGTCATGCAGGTATGCAGGCTGCTGTGGTAATGCACCAAGAGAATGTCGTACAGAATGCTGAAAAAGGTTCAAGTTCACAACCTGGGATGACTCAAGCTTCTACAGATACTACTCAGTTACATCCTCAAGCAACAGCAATGGCACCTGTTCTGGCTTCAGGTGTTGACATTAAAATGGCAAGTGCAAATATGCAAAATCAGGTTGTGAGTAGCCACAACACTCATGCTGAAGTTCAAGGTTGGGGTTCTGCTGTGGTTCCAAAGCCAGAACCACAGGCCTGGGGAGTTGCATCGTCTCAAAGGATAGAACCAAGTAATCCTGCAACTATGCCTACCCAGCCCACTTCCCATGGCCCCTGGGGTGATGCTTCGTCTGTCCAGAACGCTGCCTCTTTTAGCACTGGAAATCCAACTGGGAGTTTAACCACACCTGGATTTCTGGGCATGACTACACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAATCAAACATTACAGCTCCTCCAGCACCAGCTCCAGCTAATATGCCTTGGGGCATGGGCATGCCAGGAAATCAGAATATGAGCTGGGGTGGGGCTCTACCTGCCAATATGAATGCAAACTGGATGCCTGGGCAGGTTCCACCACCTGGAAATACAAATCCCGGATGGGTTGCTCCAACTCAGGGGCTACCTCCAGTGAATGCAGTTGGCTGGGCTGGACCTGGTCAAGTACGTCCCCATGTAAATGTGAACGCAGGTTGGGTTGTGCCTGGTCAAGGGCTAGCACCTGGAAATGCCAATCCTGGTTGGGCTGCATCGGCTGGGAATCCAAGCATGTGGGGAGGGGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTGGTACCCATGGTGGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGCGGAAGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGACTCTGCAAGTATCATGAGAGTGGACACTGCAAGAAGGGTGCTTCCTGTGATTTTCTACACACTTAG 4494 0.4495 MDADDDEAQLPKHSPQCHARLQNLPDAAVGDFPPAQLHAGDLEAVTAELSEANADATKEKGTGNEGTDAALETEKVEGEGSFPIHKEETEDGKMNEGALMEQEEERQEDDALLEHEEERQEDDALLEHEEERQEDEALLEQEEHQEDDALVEQEEEEQQEDEALMEQEEEHQQVEEEEEEEAGADGDGGMAMAEDTEGAEEIEEEKSASVSGGKRKRGAGKNAKSTGRVASKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNAYYMCYTCTFSLCKVCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNMGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDMLPSKEESPDELFDASNDRGSDSDSSYENVDLNHSKRRKAKKRAKSHSKEGNSYSAVRMLGADGPSGDDSSDWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYVKAGKDKKRKNRKKGDERGLQSNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEAYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALILQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRQENYMRPRGSAAFGRRGREIVSPRSGSISSDPWSGTRNYSNVNQELSRNLSNKGFSIKGDNASNATEVLNDVQLHLGRDRESQLSNSWERQKLSSSLESGAKTTQSLVTSEPFSTAVLEASAAPSSAGIAPPAVKINETEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRSTEKQDESILLTDALAGKFSKEPSMVDKAQTVHDLHYSSSFSRKSAQQGIEGQVGERPTFDQNSGSWNSHGTLGSPGQTNGGSWRSKDNMISLASRTPLAVEVPKNPANGWGSDTGVRNESTNLPSPTPQVTPGGTKGQAFENKWSPTPVQVAGSLLGNSFPGGHAGMQAAVVMHQENVVQNAEKGSSSQPGMTQASTDTTQLHPQATAMAPVLASGVDIKMASANMQNQVVSSHNTHAEVQGWGSAVVPKPEPQAWGVASSQRIEPSNPATMPTQPTSHGPWGDASSVQNAASFSTGNPTGSLTTPGFLGMTTPEPWRPPASSSQSNITAPPAPAPANMPWGMGMPGNQNMSWGGALPANMNANWMPGQVPPPGNTNPGWVAPTQGLPPVNAVGWAGPGQVRPHVNVNAGWVVPGQGLAPGNANPGWAASAGNPSMWGGEQSHNGDRFPNQGDRGTHGGDSGYGGKSWNRQSSFGSGSRGGSSRPPFGGQRGLCKYHESGHCKKGASCDFLHT* 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1804 1497 Gene3D SWIB/MDM2 domain 452 545 IPR036885 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1040 1065 - -
Apr5g1804 1497 ProSiteProfiles Zinc finger PHD-type profile. 237 303 IPR019787 -
Apr5g1804 1497 SMART gyf_5 946 1001 IPR003169 GO:0005515
Apr5g1804 1497 MobiDBLite consensus disorder prediction 384 456 - -
Apr5g1804 1497 Gene3D - 946 1005 IPR035445 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1028 1065 - -
Apr5g1804 1497 CDD GYF 945 1000 IPR003169 GO:0005515
Apr5g1804 1497 ProSiteProfiles Plus3 domain profile. 596 729 IPR004343 GO:0003677
Apr5g1804 1497 SMART swib_2 469 540 IPR019835 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 828 845 - -
Apr5g1804 1497 ProSitePatterns Zinc finger PHD-type signature. 240 300 IPR019786 -
Apr5g1804 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 331 IPR013083 -
Apr5g1804 1497 SUPERFAMILY SWIB/MDM2 domain 460 536 IPR036885 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 70 101 - -
Apr5g1804 1497 ProSiteProfiles GYF domain profile. 945 999 IPR003169 GO:0005515
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1 228 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1085 1121 - -
Apr5g1804 1497 SUPERFAMILY Plus3-like 597 725 IPR036128 GO:0003677
Apr5g1804 1497 CDD PHD5_NSD 239 284 - -
Apr5g1804 1497 Pfam Plus-3 domain 601 704 IPR004343 GO:0003677
Apr5g1804 1497 Gene3D - 598 726 IPR036128 GO:0003677
Apr5g1804 1497 Coils Coil 99 184 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 892 908 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 102 117 - -
Apr5g1804 1497 SMART rtf1 596 706 IPR004343 GO:0003677
Apr5g1804 1497 Pfam SWIB/MDM2 domain 462 535 IPR003121 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1449 1464 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 557 586 - -
Apr5g1804 1497 Pfam GYF domain 948 990 IPR003169 GO:0005515
Apr5g1804 1497 MobiDBLite consensus disorder prediction 127 185 - -
Apr5g1804 1497 CDD SWIB-MDM2_like 460 535 - -
Apr5g1804 1497 SUPERFAMILY FYVE/PHD zinc finger 236 289 IPR011011 -
Apr5g1804 1497 SUPERFAMILY GYF domain 936 998 IPR035445 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 390 405 - -
Apr5g1804 1497 SMART PHD_3 239 285 IPR001965 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 774 790 - -
Apr5g1804 1497 ProSiteProfiles SWIB/MDM2 domain profile. 454 537 IPR003121 -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1246 1268 - -
Apr5g1804 1497 PANTHER UNCHARACTERIZED 53 1497 - -
Apr5g1804 1497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 53 1497 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1095 1121 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 885 908 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1419 1433 - -
Apr5g1804 1497 MobiDBLite consensus disorder prediction 774 845 - -
Apr5g1804 1497 ProSiteProfiles Zinc finger C3H1-type profile. 1472 1497 IPR000571 GO:0046872
Apr5g1804 1497 MobiDBLite consensus disorder prediction 1407 1473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1804 Apr-Chr5 21342082 21353156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1804 237 310 PHD Transcription Factor Family AT4G14920 39.189 6.08e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Apr5g1804 Plus-3 4.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1804 - - gmx:121174757 2293.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1804 5 21342082 21353156 Apr5g1804 5 21342082 21353156 ECH