Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1801 ATGGAGGTTGCAGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTTTTCTTCCAGCAAACGCTTTGCGAAGAAATTTTGTGCCTGAACGCGAACACCGTCGCCGGCGGCGAAGATTTCTCCGTGGACGACCTCCTTGACCTCTCTGACGGCTCTCTCCACTACGAACAGCAAGAGTACGACGGAGGAAAGGAAAGCTTATCCGCTTCGTCGCAGTCCCAGGACCGCGGAGAAGACGATAGCAACTCCAATTCCACCGGCGTTTCCAATGATTCCATTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCTCACTTTGTGGACGATTCTCTGCCGGAGCTTTCTCTTTTATACCCGGTTCGTTCGGAGCAAACAAACCGGTTCGTTGAACCGGAGCCTAGCGCGAAGAAAACTCCTCGTTTTCCCTCTGAAATGAAAATCACCACCAAGGCCCGAACCACAATGAACAGAAAGCCCAAAGCCCGTGTCTGGTCGCTCAGCTCGCGCCCTTCTTCGCCGTCATCATGTTCATCCTCCGTGACGGCGCCGCTTGTCGTGTTGAGCGAGCCGCCAGCGAAAAAGCAGAAGAAAAGGGCCGAGGCCCAAACCGTTGGGGCCCAGGTCCAACGACGGTGCAGTCATTGCCAGGTGCAGAAGACGCCACAGTGGAGAACCGGTCCACTAGGCGCCAAAACCCTTTGCAACGCGTGTGGGGTTCGGTACAAGTCGGGGCGGCTTTTTTCGGAGTATAGACCGGCCTGCAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGCCACCGTAAAGTTTTGGAGATACGCAAGAGAAAAGGCATGGCTGGACCGGATACCGGTTCGGTTCAGAACCACACGGTTCCCACTTGCTGA 912 0.5493 MEVAAKALKPSLRREFFFQQTLCEEILCLNANTVAGGEDFSVDDLLDLSDGSLHYEQQEYDGGKESLSASSQSQDRGEDDSNSNSTGVSNDSIFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEQTNRFVEPEPSAKKTPRFPSEMKITTKARTTMNRKPKARVWSLSSRPSSPSSCSSSVTAPLVVLSEPPAKKQKKRAEAQTVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKRKGMAGPDTGSVQNHTVPTC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1801 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Apr5g1801 303 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Apr5g1801 303 Gene3D - 213 264 IPR013088 GO:0006355|GO:0008270
Apr5g1801 303 MobiDBLite consensus disorder prediction 63 91 - -
Apr5g1801 303 MobiDBLite consensus disorder prediction 162 185 - -
Apr5g1801 303 MobiDBLite consensus disorder prediction 58 91 - -
Apr5g1801 303 PANTHER GATA TRANSCRIPTION FACTOR 1 303 - -
Apr5g1801 303 PIRSF Txn_fac_GATA_plant 9 302 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr5g1801 303 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Apr5g1801 303 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Apr5g1801 303 CDD ZnF_GATA 219 276 IPR000679 GO:0006355|GO:0043565
Apr5g1801 303 PANTHER GATA TRANSCRIPTION FACTOR 1 303 - -
Apr5g1801 303 SMART GATA_3 214 268 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1801 Apr-Chr5 21318826 21321847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1801 39 285 C2C2-Gata Transcription Factor Family AT4G36240 42.366 1.52e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr5g1801 GATA 9.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1801 - - gmx:100808242 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1801 5 21318826 21321847 Apr5g1801 5 21318826 21321847 ECH