Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1794 ATGGGAGAGGCAGCGCGCGGTGGTTGCTGTCCGCCGATGGATCTGTTTCGGTCGGAGCCGATGCAGCTTCTTCAACTGATCATTCCCGTGGAATCAGCTCACCTCACCGTTTCATACCTCGGCGACCTTGGTCTCCTTCAATTCAAAGATCTCAATGCAGACAAGAGCCCTTTTCAAAGAGCTTATGCTACTCAGATAAAAAGATGTGGAGAGATGGCACGTAAATTGCGCATTTTCAAGGAACAAATGTTGAAGGATGGCGTTTCACCAACAATTTCCACAACACAGCAAGACGTAAACATTGATGACCTTGAGGTAAAACTTACTGAACTTGAGTCAGAGTTAACCGAGATCAATGCAAACAATGAAAAGTTGCAACGCTCTTACAATGAACTAGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGCGAATTTTTCCACTCAGCTCAAAGTCATGCCATAGAGCATCAAAGAGAATATGAATCACAACAACAAAGTGGTGAATCTATTGAAACGCCTTTATTACAGGACCAGGAATTGTCCACTGATTCATCAAAGCAAGTTAGGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAGAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTGTTTTTGCGGCAGGTTATTGTTGAGGAGCCTGTCACAGACCCTGTTTCTGGTGAACAGGTTGAGAAAAATGTGTTTGTGGTCTTCTATACTGGTGAAAAAGCCAAAGGCAAGATTCTGAAAATATGTGAGGCATTTGGTGCTAATCGATACCCTTTTGCTGAGGAACTTGGAAAACAAGCTCAAATGGTTTCAGAGGTTTCAGCAAGACTTGAAGAATTGAAGACTGCAATAGATGCTGGACTGCTGCACCGGGGCAACTTGCTACAGACTATTGGGATTCAATTTGAGCAATGGAATTTTTTGGTGAGGAAGGAGAAATCCATTTACCATACCCTGAACATGCTTAGCCTTGATGTGACCAAAAAATGTCTTGTGGCTGAGGGTTGGAGTCCTGTTTTTGCAACAAAGATGATCCAGGATGCATTGCAGCTGGCAGCATTTGACTCTAATTCCCAAGTCAGTGCCATTTTCCAAGTCTTGCATACTAGGGAGATGCCACCTACCTATTTTCGTACAAATAAATTTACTTCTCCATTTCAGGAAATTATTGATTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCCACTTTATATAGCATAATTACCTTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGACATGGCATATGTTTACTATTGGGAGCACTTTATTTCATAATCAGGGAGAAGAAACTTTCTGGGCAGAAACTTGGAGACATCACAGAGATGACTTTTGGTGGTCGTTATGTTATTATGTTGATGGCAATCTTCTCAATATATACTGGTTTGATCTATAATGAGTTCTTTTCTGTTCCATTTGAACTATTTGGTCCCTCAGCATATGCATGTCGTGACCTTTCTTGCGGGGATGCTACTACAGTTGGTTTGGTAAAAGTGCGTCGCACTTACCCATTTGGAGTTGACCCAGTATGGCATGGCACAAGAAGCGAATTACCATTTCTAAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTTGCCCAAATGAATCTTGGAATTATAATGAGCTATTGCAATGCCAGATTCTTTGGAAGTGGCGTGAATATATGGTTCCAATTTATACCCCAGATGATATTTCTCAACAGTCTATTTGGTTACCTATCTGCTCTCATTATTGTAAAGTGGTCTACTGGTTCTCAAGCTGATTTGTACCATATAATGATTTACATGTTCCTGAGTCCTACAGATGATTTGGGTGAAAATCAACTTTTTGTTGGTCAGAAAATTTTGCAGCAAGTGCTTTTACTTATGGCTCTTGTGTCTGTACCCTGGATGCTGATCCCAAAACCTTTTATTTTGAAGAAGCAACATGAAGATAGGCACCAGGGTGAATCATATGCACCACTTCAAAGCGCAGAAGAGACCTTACAAGTGGAGTCAAATCATGATTCCCATGGTCACGAGGAATTTGAATTTAGTGAAGTCTTTGTGCATCAACTCATACACACCATCGAATTTGTACTTGGAGCTGTCTCTAATACAGCATCTTATCTTCGTCTGTGGGCTCTTAGTCTTGCTCATTCAGAGTTATCCAGTGTATTCTACGAGAAGGTTCTGATTATGGCATGGGGATACAACAACGTGATTATCCTGATAGTGGGGTTTATTGTCTTTGTTTTCGCTACCGTTGGAGTGTTACTTGTCATGGAAACTCTAAGTGCCTTCTTGCATGCTTTACGACTTCACTGGGTGGAGTATCAAAACAAGTTCTATGAGGGTGATGGTTACAAGTTCTACCCTTTCTCCTTCTCATCGCTACATGACGAGGATGACTGA 2460 0.4146 MGEAARGGCCPPMDLFRSEPMQLLQLIIPVESAHLTVSYLGDLGLLQFKDLNADKSPFQRAYATQIKRCGEMARKLRIFKEQMLKDGVSPTISTTQQDVNIDDLEVKLTELESELTEINANNEKLQRSYNELVEYKLVLQKAGEFFHSAQSHAIEHQREYESQQQSGESIETPLLQDQELSTDSSKQVRLGFLAGLVPREKSMAFERILFRATRGNVFLRQVIVEEPVTDPVSGEQVEKNVFVVFYTGEKAKGKILKICEAFGANRYPFAEELGKQAQMVSEVSARLEELKTAIDAGLLHRGNLLQTIGIQFEQWNFLVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFATKMIQDALQLAAFDSNSQVSAIFQVLHTREMPPTYFRTNKFTSPFQEIIDSYGVAKYQEANPTLYSIITFPFLFAVMFGDWGHGICLLLGALYFIIREKKLSGQKLGDITEMTFGGRYVIMLMAIFSIYTGLIYNEFFSVPFELFGPSAYACRDLSCGDATTVGLVKVRRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNARFFGSGVNIWFQFIPQMIFLNSLFGYLSALIIVKWSTGSQADLYHIMIYMFLSPTDDLGENQLFVGQKILQQVLLLMALVSVPWMLIPKPFILKKQHEDRHQGESYAPLQSAEETLQVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLIMAWGYNNVIILIVGFIVFVFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFYPFSFSSLHDEDD* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1794 819 PIRSF ATP6V0A1 11 819 IPR026028 GO:0000220|GO:0046961
Apr5g1794 819 Coils Coil 94 135 - -
Apr5g1794 819 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 5 818 - -
Apr5g1794 819 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Apr5g1794 819 PANTHER VACUOLAR PROTON ATPASES 5 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1794 Apr-Chr5 21240728 21250802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1794 13 819 Primary Pumps ATPases(2) AT4G39080 77.379 0.0 1303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1794 K02154 - gmx:100783125 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1794 5 21240728 21250802 Apr5g1794 5 21240728 21250802 ECH