Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1792 ATGGCTAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCGTCCTTATGCGGCCCTCGGATCCGTCGAAACCGTCGTATGTGGCTAGGATCGAGCGGATCGAAGCTGATTCTCGAGGCGCGAACGTGAAGATTCACGTCCGTTGGTACTACCGGCCGGAGGAGTCAATCGGAGGTCGCCGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTTGACGTTCAGAGCGCTGACACCATCGAAGGCAAGTGTACGGTCCACAGTTTCAAGAGCTACACCAAGCTCGATGCTGTTGGGAATGACGATTTCTTCTGTCGCTTCGAGTACAATTCCTCTACTGGCGCCTTCAATCCTGACAGAGTCGCTGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTGCAGTGTGAGGGCTGCAGTGATTGGTTTCACCCTGCTTGTATAGACATGACTGTGGAGGAAGCAAAAAGACTTGACCACTTCTTTTGTGAAGGTTGTTCTGCCGAAGGTCAAAAGAAGTTGCAAAATTCTCATTCTGCTTCAAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGAAGGTAA 651 0.5008 MAKPKAPRRTLESYSVKHISKTIRAGDCVLMRPSDPSKPSYVARIERIEADSRGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCEGCSAEGQKKLQNSHSASRHSDTKVDTKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1792 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Apr5g1792 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Apr5g1792 216 Pfam PHD-finger 141 189 IPR019787 -
Apr5g1792 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Apr5g1792 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Apr5g1792 216 Gene3D - 2 135 IPR043151 -
Apr5g1792 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Apr5g1792 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Apr5g1792 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Apr5g1792 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Apr5g1792 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Apr5g1792 216 MobiDBLite consensus disorder prediction 194 216 - -
Apr5g1792 216 SMART PHD_3 141 188 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1792 Apr-Chr5 21231333 21235173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1792 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 1.70e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr5g1792 BAH 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1792 - - gmx:100787968 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1792 5 21231333 21235173 Apr5g1792 5 21231333 21235173 ECH