Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1791 ATGGCGACTTATTACTCAAGTTCATGTTCAAGTAATCAAAGAGATGCTGTGCCTATTCTCTGCCGTAGGGACCCTTTGCCTAATTCATATCCCGACACATTATATGTCAACTCTGCTTCATATTCACAAACATTCTCTGCCAATTCTCAGCAGCAAAATAATTGCTTTGTCATTCCATCATTAGGTGCTTCACATTCCACTCCTCAACAAGAAGAAATCTTAGCCAATGTTTCCGGGTTCCAAACCTTACAAGCCCAGGGATTATCTCTAAGCCTTGGAACCCAAATGCCCTCAGGAGTTCAAATGCCTTCTATCCATGATAGGAATCAAAGTTCAAGTTTTGATTCGTTTTTGGCTACTAATCCATCAATTTTGGGCAATGGGGCCTATAAAAGTGGCTTATCTAGGAATGATGGTATGAGACATTCTGAAAATTTTCCATCTGGATCACCTGAAGTTAGTCAAGATTTGAATAGAGGGGATTTTTCGTTGCATGGAATGTCCAGTCTTGGAAGAACAGTTCCTAACTCGAAGTACCTCAAGGCAGCGCAACAACTGCTTGATGAAGTTGTTGATATCCGAAAAGCTATTAAAAGACCAGGTATGATGAGAAGTCATAGCACACATGGGAACTGTCGGAAGAATTCTAGGGAGGATGATGAGCTTCTAGAATATGAAGGGCCTTCAGCAAATGGAGTGCCTAATTCTCAAGCTTCAGCTAGTAACTCCTCTTGCGAGCTTTCACATGCTGATAAACAAGATCTTCACAACAAGTTAACCAAGCTTTTGTCAATGTTGGATGAGGTTGACAGTGGGTACAAACAATATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATCTGGGGCAGCTAAACCATACACAGCCCTTGCTCTTCAAACCATTTCACGTCATTTTCGGTGTTTGCACGATGCAATCACTGGCCAAATCAGTGCAATACAAAAAAACCTTGGAGAGCAAGATGCTTCTGGAAGTAATAAAGGAGTTGGAATAGCAAGACTAAGGTATGTTGACCAACAAATCCGACAACAAAGGGCTCTTCAGCAGCTTGGCATGACGCAACATGCATGGAGACCACAAAAGGGGCTTCCAGATAGCTCTGTTTCAATTCTTCGGGCTTGGCTGTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAGCAAGAGAATTGTGATGCTGACATGAATTCAAGCTCTTCATCTGAAAATGCATCCAAGGTAACAAAAAGTGATGTCAAGACCTCCAATGATATGGGTGATGATTCGCAGCAGTCTCAAAGTCCAATAATAGCCGATAAGAATCACAGTGGTGGACAACCTAAAGACCCCAGATATGATCAAGTTCTTGATACAGAAATCATGGCATCCACTGGATTAACCAGTCTCATATACGGAGGTCATGAGACTGAAACTGAATATAGATCACTAAAGCTGACCGAGGAGCAAAAGCCAAACTTGGATGACTGTGGTCTCTTCTCAGATGACATGGCCGTTCTGTCTGATGGAGCTAACAACAGGTTTGTGGCAGCTGGTCTAACCTGCCAAATGTCAGAGTTTGGGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTAGGTTTGCAGCATTGTGAAAGGGGTAATTTTTTGCCTGGTGAGACCCATCTTGGTTTGGTGTCCATGAGAGAGGATGACATCTACAACGCTGCTGCAGCTTCTACTATAGGAGCAGACACAGCAGAACTTGAGTGCATTGGTGCTGGAAACCAGCAGCAAAGGTTCAGTTCGCCGTGTATTTTGCATGATTTTGAAGTATGA 1944 0.4275 MATYYSSSCSSNQRDAVPILCRRDPLPNSYPDTLYVNSASYSQTFSANSQQQNNCFVIPSLGASHSTPQQEEILANVSGFQTLQAQGLSLSLGTQMPSGVQMPSIHDRNQSSSFDSFLATNPSILGNGAYKSGLSRNDGMRHSENFPSGSPEVSQDLNRGDFSLHGMSSLGRTVPNSKYLKAAQQLLDEVVDIRKAIKRPGMMRSHSTHGNCRKNSREDDELLEYEGPSANGVPNSQASASNSSCELSHADKQDLHNKLTKLLSMLDEVDSGYKQYYHQMQIVVSSFDVIAGSGAAKPYTALALQTISRHFRCLHDAITGQISAIQKNLGEQDASGSNKGVGIARLRYVDQQIRQQRALQQLGMTQHAWRPQKGLPDSSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQENCDADMNSSSSSENASKVTKSDVKTSNDMGDDSQQSQSPIIADKNHSGGQPKDPRYDQVLDTEIMASTGLTSLIYGGHETETEYRSLKLTEEQKPNLDDCGLFSDDMAVLSDGANNRFVAAGLTCQMSEFGRFKSGSGVSLTLGLQHCERGNFLPGETHLGLVSMREDDIYNAAAASTIGADTAELECIGAGNQQQRFSSPCILHDFEV* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1791 647 SMART HOX_1 369 433 IPR001356 GO:0003677
Apr5g1791 647 CDD homeodomain 369 430 IPR001356 GO:0003677
Apr5g1791 647 Pfam Associated with HOX 174 319 IPR006563 -
Apr5g1791 647 SMART prehox3 168 320 IPR006563 -
Apr5g1791 647 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 35 598 - -
Apr5g1791 647 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 598 - -
Apr5g1791 647 MobiDBLite consensus disorder prediction 139 157 - -
Apr5g1791 647 MobiDBLite consensus disorder prediction 441 494 - -
Apr5g1791 647 MobiDBLite consensus disorder prediction 135 161 - -
Apr5g1791 647 MobiDBLite consensus disorder prediction 230 248 - -
Apr5g1791 647 MobiDBLite consensus disorder prediction 200 219 - -
Apr5g1791 647 MobiDBLite consensus disorder prediction 441 482 - -
Apr5g1791 647 Gene3D - 364 443 - -
Apr5g1791 647 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677
Apr5g1791 647 MobiDBLite consensus disorder prediction 225 249 - -
Apr5g1791 647 SUPERFAMILY Homeodomain-like 371 436 IPR009057 -
Apr5g1791 647 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1791 Apr-Chr5 21222679 21226834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1791 152 458 Homeobox Transcription Factor Family AT2G16400 60.772 2.13e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr5g1791 POX 4.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1791 - - gmx:100801522 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1791 5 21222679 21226834 Apr5g1791 5 21222679 21226834 ECH