Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1767 ATGTTGCACTGTCTCAACACTTCGGGGAATCTAGCTGGTGGCTCCTCCGACATGACAGTGTTGGAAAGACAAAAGGCGAGGATGAAGTGGGAACAGGAACAGGGCTCCTTTTTTGGAACTGGGTTCAACGCTGTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGCATGTTGAGAATTCTGAGGCTTACCCCGGAGCAGGAATAGTATTGCACAAGTTTGATATGGCACCCGCTACTGCTCCACCTGCTGCTGGGTTTGATTTGAGTTGTGCAATATCAAGGACTTTTAGTTGTCCGCCCACTCTGCCAGAGCCTAAAGCCACTCACTTCTCATCAATTGGGAAAGAGTGTTTTAAGAAGAGGAAAACCCACAATCCCAAGTTTGTTGCAGAAAATTATAAGAAAGACAAGAAGATCAAAGTGGGTGTGGAGGATGGAGAATCCAAAATCACAGGGCAGACCAAGAATAACACAACCACCACAAATAGCATTAGCAACAACAGAGAAACTTGTGCAGATGCTTCAAATTCAAATCCTTCCGAGGTTCAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGAGAAAAGATAAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCCGGTTGCAACAAAATCACCGGAAAAGCAGGAATGCTAGATGAGATCATCAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTTTTGTCAATGAAATTGGCTACTGTGAACCCAAGGCTTGGCTCTAATATCGATGATCAATGTGAGAAAGAGGTGTTTCTTGCTTGTGCTTCAACATTTCCAAACACGGGGATGTCATTTGACATCACCAATTCCTCCTATCTTCAGTTCAATTCACCTCAACAAATTGTTTCATATGGTGGATTAGATATGGGGATTAACTCTTCCGATATTGGGCTTAGAAGGACCATAAGTGCTCCTGTATCAATGCCTGAAACGTTTCTTGACGACTCCTGTTTCAATCAATTTCTACCTTCCTCAACATGGGAAGGTGATTTCCACAACCTTTACAATTTGGATTTTGATCAAGCACCAACAACATCCTTTCCTTCTCAGCTGTTCACAGGTCTACTTGAAGCTGGCAATCTAAAGATGGAGATGTAG 1179 0.4283 MLHCLNTSGNLAGGSSDMTVLERQKARMKWEQEQGSFFGTGFNAVFSSSSSSSSSLHVENSEAYPGAGIVLHKFDMAPATAPPAAGFDLSCAISRTFSCPPTLPEPKATHFSSIGKECFKKRKTHNPKFVAENYKKDKKIKVGVEDGESKITGQTKNNTTTTNSISNNRETCADASNSNPSEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLGSNIDDQCEKEVFLACASTFPNTGMSFDITNSSYLQFNSPQQIVSYGGLDMGINSSDIGLRRTISAPVSMPETFLDDSCFNQFLPSSTWEGDFHNLYNLDFDQAPTTSFPSQLFTGLLEAGNLKMEM* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1767 392 CDD bHLH_AtBPE_like 187 271 - -
Apr5g1767 392 Pfam Helix-loop-helix DNA-binding domain 201 248 IPR011598 GO:0046983
Apr5g1767 392 Gene3D - 194 270 IPR036638 GO:0046983
Apr5g1767 392 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 64 373 IPR024097 GO:0006355
Apr5g1767 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 264 IPR036638 GO:0046983
Apr5g1767 392 SMART finulus 203 253 IPR011598 GO:0046983
Apr5g1767 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 247 IPR011598 GO:0046983
Apr5g1767 392 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 64 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1767 Apr-Chr5 21090641 21092880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1767 9 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.529 9.48e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g1767 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1767 - - gmx:100798855 474.937