Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1766 ATGGCCTCAAGCATCCTTAGCAAACAAAAGCCTTATGATTCATCTTGGACTCCAAAACAGAACAAGCTGTTTGAAAAGGCACTTGCAAAATATGACAAGGATACCCCTGAACGTTGGCTCAATGTAGCCAAAGCAGTTGGTGGTAAATCAGCTGAGGAAGTTAAGAGACATTATGAGATACTTTTGGAGGATCTCAGACACATAGAGTCTGGCCATGTTCCCATTCCCAATTACAAATCCACTGCAAGAAGCTAG 255 0.4235 MASSILSKQKPYDSSWTPKQNKLFEKALAKYDKDTPERWLNVAKAVGGKSAEEVKRHYEILLEDLRHIESGHVPIPNYKSTARS* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1766 84 CDD SANT 15 62 IPR001005 -
Apr5g1766 84 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Apr5g1766 84 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Apr5g1766 84 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Apr5g1766 84 Gene3D - 9 75 - -
Apr5g1766 84 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Apr5g1766 84 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Apr5g1766 84 SMART sant 12 64 IPR001005 -
Apr5g1766 84 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1766 Apr-Chr5 21085820 21086074 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr5g1766 Myb_DNA-binding 5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1766 - - gmx:100805232 154.066