Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1764 ATGGCTTCTGCAGAAATTGAGTTCCGATGCTTTGTTGGTGGGTTAGCCTGGGCCACCGACAACGATGCTCTCGAGAAAGCCTTCTCTTCCTTTGGCGAGATCGTCGAATCGAAGGTCATCAACGATCGTGAGACTGGAAGGTCGAGAGGATTTGGATTTGTGACCTTCGCTACGGAGCAGGCCATGAAGGACGCCATCGAAGGCATGAACGGTCAGAACCTTGACGGCCGTAATATCACTGTGAACGAGGCTCAGTCCCGTGGAAGGGGCGGAGGTGGCGGCGGCGGTTATGGAAGCGGTGGCGGTGGTGGAGGATACGGCGGCGGAGGGTACAGCCGTGGTGGAGGAGGTGGATATGGAGGCGGTGGCCGTCGTGAAGGTGGCTACAGCCGCAACGGTGGTGGAGGCTATGGAGGCGGCGGCGGCGGAGGATATGGAGGAGGTGGTTATGGCGGTGGAAGAGACCGTGGGTACGGAGATGGTGGGGCCCGCTACTCAAGAGGAGGTGGTGCTTCTGATGGTAGCTGGAGGAATTAA 537 0.5903 MASAEIEFRCFVGGLAWATDNDALEKAFSSFGEIVESKVINDRETGRSRGFGFVTFATEQAMKDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGSGGGGGGYGGGGYSRGGGGGYGGGGRREGGYSRNGGGGYGGGGGGGYGGGGYGGGRDRGYGDGGARYSRGGGASDGSWRN* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1764 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Apr5g1764 178 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 139 - -
Apr5g1764 178 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Apr5g1764 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Apr5g1764 178 SMART rrm1_1 9 82 IPR000504 GO:0003723
Apr5g1764 178 PANTHER GEO13361P1-RELATED 1 139 - -
Apr5g1764 178 MobiDBLite consensus disorder prediction 145 178 - -
Apr5g1764 178 Gene3D - 2 106 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1764 Apr-Chr5 21075727 21076910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1764 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 7.15e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1764 - K13195 gmx:100777821 166.777