Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1750 ATGGAGGATGGTGAGAAACCGAAAGAAAATTCACATGCTAATTCCGATATGGAGGTTGTTGATTCCACTTCGCAAAGTCAACACGTGGCTTTCCCTGCGCACGTGCCAGCTCCCAATTCCCCTGCTCCGCTACAGCAGGATCAAGTAATGGTTGATCAGGGTAATGGGAACAAAAACGGCGATTCTGCTCCTATTTCTGTGCCTGAAACCAAAATAATTAGTGAGAATCAGCTTGAATTTGAAGATGTTAAAACCCTATCGCGTCAGGAACTGATCACTCCAAAGCCTAAAGAAAAAAATGTCAGAGAAATGAAGAACGTGCTAAACGATGCTGAGATGACCGATTATGATGAGTCTGGTACGGTTCTGGAACGAGAAGCATTTATGAAAGAGCTGGAGATTTTCTACCGAGAAAGGTCCTTGGAATTTAAGCCTCCTAAATTTTATGGGGAGCCACTTAATTGCTTAAAGCTATGGAGAGCTGTTATCAGACTAGGTGGCTACGATGTGGTAACTGGATCCAAGCTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCCAAGACTTGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTATTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTACAACTCCCTGTTGGATCATTCCATCAATCTTCAAGTGTGGAAAAAGAGACTGCTGTTTACCAGGCTTCAGGCTCAGGTAGGGCACGAAGGGATGCTGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAGCTTCAGTTCCACGCCAAAGCGTGAAAAGAACCTCAAAAGTATTGGTGTGATTAATAAACAAAGAACACCATCCAGTCTGGAGCATACTGAGAAAACTGCAAATATTGAAGGAGATAGACAACTGGTCACAGCAGTGGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTGGTTCCTGGACTCCTTCGTGAGGAGGTGAGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTCTGCCAGAACACGTTGACAATCCATGGGGAATAACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTACCTTTTGAGCAGGGAGCTTTGTGA 1269 0.4539 MEDGEKPKENSHANSDMEVVDSTSQSQHVAFPAHVPAPNSPAPLQQDQVMVDQGNGNKNGDSAPISVPETKIISENQLEFEDVKTLSRQELITPKPKEKNVREMKNVLNDAEMTDYDESGTVLEREAFMKELEIFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQSSSVEKETAVYQASGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKSFSSTPKREKNLKSIGVINKQRTPSSLEHTEKTANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1750 422 SMART bright_3 123 214 IPR001606 GO:0003677
Apr5g1750 422 SMART ARID_2 119 209 - -
Apr5g1750 422 MobiDBLite consensus disorder prediction 1 15 - -
Apr5g1750 422 Pfam ARID/BRIGHT DNA binding domain 124 209 IPR001606 GO:0003677
Apr5g1750 422 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 321 422 IPR002068 -
Apr5g1750 422 SUPERFAMILY HSP20-like chaperones 330 417 IPR008978 -
Apr5g1750 422 ProSiteProfiles ARID domain profile. 122 213 IPR001606 GO:0003677
Apr5g1750 422 MobiDBLite consensus disorder prediction 16 30 - -
Apr5g1750 422 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 29 419 - -
Apr5g1750 422 MobiDBLite consensus disorder prediction 41 66 - -
Apr5g1750 422 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 29 419 IPR045147 GO:0006357
Apr5g1750 422 CDD ARID 124 209 - -
Apr5g1750 422 Gene3D - 317 421 IPR008978 -
Apr5g1750 422 SUPERFAMILY ARID-like 114 219 IPR036431 GO:0003677
Apr5g1750 422 CDD ACD_sHsps_p23-like 337 416 - -
Apr5g1750 422 MobiDBLite consensus disorder prediction 1 66 - -
Apr5g1750 422 Gene3D - 123 220 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1750 Apr-Chr5 20914358 20920294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1750 93 419 ARID Transcription Factor Family AT1G76510 70.427 2.32e-159 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr5g1750 ARID 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1750 - - gmx:100777965 699.123