Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1749 ATGGCTTCTTACAACAACAACATTGAAGGAAACAAAGCTCAATTAGGTGGTTTTGTTCCACAACTGTTTATGACACCAAACCTACACCTTCAAACCCCTAACGCTCAGCACTCCGATGACGACGCAGGTGGACCCTCCTCCACGCGCCGCCCTCGTGGCCGTCCTCCGGGATCCAAGAACAAGCCCAAGCCACCCATCATCGTAACGCGTGACAGCCCCAACACGCTCCGCACACACGTGTTGGAGGTCTCGGCCGGAGCTGACGTGGCGGAGAGTCTGTCAACTTACGCGCGGCGCCGAGGGAGGGGCGTGTGCGTGCTCAGCGGCACCGGCACGGTGACCAACGTCGGGCTCCGTCAACCGGGAGGGTGCGTCGTGACGCTTCAGGGAAGATTCGAGATTATTTCCATAACGGGGACGGTGCTTCCGCCGCCGGCGCCTCCAGGCTCCGACGGGTTGTCGATTTATTTGTCGGGGGCGCAGGGACAGGTGGTCGGCGGCGGCGTGGTGGCCCCTTTGGTGGCTTCGGGTCCCGTGGTTTTAATAGCTGCTTCATTTGCCAACGCCATGTTTGAAAGGTTACCCTTGCCCTTCCATGATGATGATCATGAGCATGATAATGATCATGATGATGATCAACTCCATCATCATGCGGCAACATCGCAGTCTTCTGGCGTCACGGGAACTGGACAGGTGGCAGAAGGAAGGAACTACCCTTTCTCATCTTCGGTTCAGGGTGACCTATTTGGATGGGGTAGAACTGCATCTGCAACTGCCCAACCCAAACCTCATCCTTTTTAA 801 0.5668 MASYNNNIEGNKAQLGGFVPQLFMTPNLHLQTPNAQHSDDDAGGPSSTRRPRGRPPGSKNKPKPPIIVTRDSPNTLRTHVLEVSAGADVAESLSTYARRRGRGVCVLSGTGTVTNVGLRQPGGCVVTLQGRFEIISITGTVLPPPAPPGSDGLSIYLSGAQGQVVGGGVVAPLVASGPVVLIAASFANAMFERLPLPFHDDDHEHDNDHDDDQLHHHAATSQSSGVTGTGQVAEGRNYPFSSSVQGDLFGWGRTASATAQPKPHPF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1749 266 PIRSF ESCAROLA 22 263 IPR014476 GO:0003680
Apr5g1749 266 CDD DUF296 77 158 IPR005175 -
Apr5g1749 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 244 IPR014476 GO:0003680
Apr5g1749 266 MobiDBLite consensus disorder prediction 31 71 - -
Apr5g1749 266 MobiDBLite consensus disorder prediction 218 237 - -
Apr5g1749 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 197 - -
Apr5g1749 266 MobiDBLite consensus disorder prediction 200 237 - -
Apr5g1749 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 187 IPR005175 -
Apr5g1749 266 MobiDBLite consensus disorder prediction 200 217 - -
Apr5g1749 266 Gene3D - 76 201 - -
Apr5g1749 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 35 244 - -
Apr5g1749 266 ProSiteProfiles PPC domain profile profile. 73 207 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1749 Apr-Chr5 20908934 20909734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1749 46 196 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 74.074 3.30e-70 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1749 - - gmx:100778715 283.878