Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1747 ATGGCATACCAAGCGATCCAGGGTCCTAGCTCGGGATCGAGTTCGAGTTCAGGGTTTCAGCTATTGAATTCTCCCTTCGGCGACACCACATACACGAAGGTGTTCGTCGGAGGATTGGCTTGGGAGACACAGAGTGAAACCATGCGCCGTTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTCGTAATCACTGATAAGAACACGGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGGGCATGTGCTGATCCAACCCCTGTCATTGATGGTAGAAGGGCAAATTGTAACTTGGCTTCACTTGGTCGACCACGCCCACCTTTGCCTTATGGACGGATAAGACCTGCCTCCCCGTACGTTGGAAGCGTACAACCAGCCCGAGGAGCTTATGTTGGAGGATTTGGCTACCAGCAACCACTTTCCTATGGCTATCAGCAAGGATTGGTTTACCCTCCTTATGGGTATACGACATATGGACCTGAGTACATCTACCCACAGAGTCTGTACAACCCATATATGGGACAACAGTACCTGCAGATATATGGAGTGCCTGGGGCTATGAATACAAATGTTTATCCTTATGGACAATTGGGTCAGGCTATTCCCAGTGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTACGGTGGATCCAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGAATTGCTGCACCAGTTCCTGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCCTCAGTTTATGCAAGGCAGCGGTCCTGACCAAACAGCTGGGTATCCTTAGTTTGCAGCAGGACTAAGAGCAGTGGAACTGCTACTTGAGTGGCGGGCTTCCAATCTAGCCTTGCAATTATATAATTTGCAGGTCATATATAGTCATGCTCACCAAGTTGTGTCTGTCGCTCCAGATGGCGAAGGAAACTGGATTGTGCGGGCTGTTTCCATTTGGACGTTTACACTAGTGTATTTATACCTAATACTACCTGTACTCATGAAGAGTGGTAGTATTGGATCAATGGGTGCTGGAATAGGTTTCTGGCAGCCATGTAGGAATAAACTTCTGTAA 1143 0.4847 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSVQPARGAYVGGFGYQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQSLYNPYMGQQYLQIYGVPGAMNTNVYPYGQLGQAIPSGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQAPYPRIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAGYP*FAAGLRAVELLLEWRASNLALQLYNLQVIYSHAHQVVSVAPDGEGNWIVRAVSIWTFTLVYLYLILPVLMKSGSIGSMGAGIGFWQPCRNKLL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1747 379 SMART rrm1_1 33 105 IPR000504 GO:0003723
Apr5g1747 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Apr5g1747 379 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 281 - -
Apr5g1747 379 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Apr5g1747 379 CDD RRM_RBM24_RBM38_like 32 107 - -
Apr5g1747 379 Gene3D - 4 116 IPR012677 -
Apr5g1747 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Apr5g1747 379 PANTHER BOULE-RELATED 1 281 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1747 Apr-Chr5 20892983 20897813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1747 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 1.62e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1747 - - aprc:113864528 717.613