Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1744 ATGTCTGGAACCGAAATGGGAAGCAGGGAGCAATTCTCGCTTGGGATGCACAGTCTCCAACATCAGCATCAGCATCAGCATCAGCATCAACCTCAACTTCATCAAAACATGCGATTGGACTATGCTGCTGATGGCACCGCTGTTTACGCTGCCAGTACTGTTAACATGAACGGTGGAGAATCCTCTGCTGCAGCAGTGCCCCAGGGACTAGGCCTGGGCCAGGGCCAGGGCCAGGTCCAGGTCCCGGCCATGATGGGTGGTTCTTCAGAAACACTGAAGAGAAAGAGGGGTAGGCCCAGGAAATATGGGCCTGATGGTACCATGTCGTTGTCCTTGACGACTACCCCTCCTCCTGCTTCTTCGGCCGCCGTGCCCGTTAGCCACTCTGGTGGGCAGTTTCCACCTGCTTCTGCTTCTGATTCTGCCTCACCTGGTTCCTTGAAGCGTAGAGGCAGACCTCGTGGCTCTCTCAATAAGAATCCCTCAAAGTCTTCTTACGGGTCAGGAGCTACATTTACACCACATGTCATTACTGTGAAAGCTGGAGAGGACTTGTCATCCAGAATTATGGCACTTTCTGAGAATGATTCAAGGCATGTTTGCATCTTAACAGCAAATGGAGCCATATCCAATGTTACACTTCGGCAACCCTCCACAACTGGTGGAACTGTGACTTACGAGGGGCGATTTGAGATCCTGTCACTTGGTGGTTCATTGTTTATTGCTGAAAATGGTGGGCAGTGCAGCCGCGTAGGTGGACTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTATTGGGTGGTGGAGTTGCAGGTCTTCTGATAGCTGCATCCCCTGTTCAGGTAGTTTTGGCAAGCTTCGTCTCAGATGGTCGCAAGGCATCCAAGTCTGCAAAGCGGATGGGAAATGTATCTGCTCCCCCAAAGGCTTCCACAGCAGGCCAAAGCAGCTCGCCATCACGTGGCACTGTTAGTGAGTCATCGGGTGGGCCTGGAAGCCCGCTAAACCAAAGCACAGGAGCTTGCAATAACAATAACCCAGCACAAGGCTTTTCAGGCATGCCTTGGAAGTAA 1074 0.5242 MSGTEMGSREQFSLGMHSLQHQHQHQHQHQPQLHQNMRLDYAADGTAVYAASTVNMNGGESSAAAVPQGLGLGQGQGQVQVPAMMGGSSETLKRKRGRPRKYGPDGTMSLSLTTTPPPASSAAVPVSHSGGQFPPASASDSASPGSLKRRGRPRGSLNKNPSKSSYGSGATFTPHVITVKAGEDLSSRIMALSENDSRHVCILTANGAISNVTLRQPSTTGGTVTYEGRFEILSLGGSLFIAENGGQCSRVGGLSVSLSGPDGRVLGGGVAGLLIAASPVQVVLASFVSDGRKASKSAKRMGNVSAPPKASTAGQSSSPSRGTVSESSGGPGSPLNQSTGACNNNNPAQGFSGMPWK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1744 357 CDD DUF296 173 287 IPR005175 -
Apr5g1744 357 MobiDBLite consensus disorder prediction 157 171 - -
Apr5g1744 357 Gene3D - 174 302 - -
Apr5g1744 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 289 - -
Apr5g1744 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 288 IPR005175 -
Apr5g1744 357 ProSiteProfiles PPC domain profile profile. 169 309 IPR005175 -
Apr5g1744 357 MobiDBLite consensus disorder prediction 75 171 - -
Apr5g1744 357 MobiDBLite consensus disorder prediction 295 357 - -
Apr5g1744 357 MobiDBLite consensus disorder prediction 308 351 - -
Apr5g1744 357 MobiDBLite consensus disorder prediction 107 144 - -
Apr5g1744 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 356 IPR039605 GO:0003680
Apr5g1744 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1744 Apr-Chr5 20877926 20882437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1744 84 357 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 55.986 1.65e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1744 - - pvu:PHAVU_009G008300g 414.461