Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1742 ATGGAAGAGGTACTGTGTGAACTTAATGATCATGAAAAGAGAAACGAGCAAGGTCTTCCACCGGGTTTCAGGTTTCATCCCACTGATGAAGAACTCATAACCTTTTACCTTGCTTCAAAGGTCTTTAATGGGAGTCTCAGTAGTGTCAAGTTTGCCGAGGTTGACCTCAATAGATGTGAGCCATGGGAACTTCCAGATGTGGCAAAGACGGGGGAGAGAGAGTGGTATTTGTTCAGCCTAAGGGACAGAAAATACCCAACAGGACTAAGAACAAACAGAGCAACGGGTGCTGGGTACTGGAAGGCCACTGGGAAGGACAAGGAAGTGTACAGTGCATCAAGTGGAGGGTTACTTGGGATGAAGAAGACACTTGTTTTCTACAAAGGTAGGGCCCCTCGCGGGGAGAAGACCAAATGGGTGATGCACGAGTACCGTTTGGACGGTCACTTTTCCCTCTCTCACCCTCACACTTCTAAGGAGGAGTGGGTGATATGCAGGATATTTCAAAAATCTGGGGAAAAGAGAACTTCACTGCTCCAAGTCCAAGGACATAATTTAGATGCCTCTTCATCCCCAGGAAAAAGTTGTCTCCCTCCATTACTTGCAAGCCCAACTTCATTTACATTGGAACTAGATTACCAAAATGATCTCTCTCACCCTCACCCTTTCTCATTGCATACATCTCAACCTTCTTTCCCAATTGCATCAGGAGAAATCACCAACACAAGATCAAACCATCCATCATTTTCAGACCTACTCTTCAAGTCCCAGCTCTCACCACAAAATTGCACCCTCAAAGTCAAGGATCAAACCCATTTAAAGCTAAGCAAAACGGAGGGTACATTTTATCAATACCAACTACTAGATGAAGCTAATCACTTGCGCTGGATGGACAAGTTGAACCCAAATGCAAGTAATTTCCACTGCTCCATTATTCCTCTTGAGGTAGATGCTGGCCCAATGGGGTTCTCAGGAGCTGCAAATGCTGAATTTAGGGACATGTCTACTTCAACAACCTTTAATAGAGTAGGGTTGCAGCAGGTGCTAGATGCTCCTATTGGAATAGATTCTTGGCCGCAGGCCCAGCATGCTTAA 1095 0.453 MEEVLCELNDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGSLSSVKFAEVDLNRCEPWELPDVAKTGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGGLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGHFSLSHPHTSKEEWVICRIFQKSGEKRTSLLQVQGHNLDASSSPGKSCLPPLLASPTSFTLELDYQNDLSHPHPFSLHTSQPSFPIASGEITNTRSNHPSFSDLLFKSQLSPQNCTLKVKDQTHLKLSKTEGTFYQYQLLDEANHLRWMDKLNPNASNFHCSIIPLEVDAGPMGFSGAANAEFRDMSTSTTFNRVGLQQVLDAPIGIDSWPQAQHA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1742 364 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Apr5g1742 364 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Apr5g1742 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3-LIKE 8 215 - -
Apr5g1742 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3-LIKE 219 341 - -
Apr5g1742 364 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Apr5g1742 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 219 341 - -
Apr5g1742 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 215 - -
Apr5g1742 364 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1742 Apr-Chr5 20869812 20872217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1742 1 176 NAC Transcription Factor Family AT1G76420 75.000 2.89e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr5g1742 NAM 4.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1742 - - gmx:100780313 494.197