Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1739 ATGACTCGTCCCTTCAGATATTTAGGCGAGACCGACTCGTCCCATGACTCCCCCATCGGCGATTCCGATTTCATCGTCATCGTCGCCGCCCTCGTCTGCGCTCTCATCTGCGTCGTAGGCCTCATCGCCGTCGCCCGCTGCGGCTGTCTCCATCGCCTACGACTCTCCTCCACCTCTGCTCCTCCTCCTCCTCCCGCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTTCTCCGCTCCCTTCCCAAGCTCACCGCCACCGCCGAATCCGCGGTCAAGTTCTCGGACTGCGCGATCTGCTTGACGGAGTTTTCGGCCGGAGATGAAATCCGAGTGCTGCCCCAGTGCGGGCATGGATTCCACGTGTATTGCATCGACGCCTGGCTGAAATCGCATTCGTCGTGTCCGTCGTGCCGTCAGATTCTGGTGGTTTCTCGGTGCGACAAGTGCGGCGGAATCCCTGTCCATGGTCCTGGCAGCTCGAGCACCGCGCCGCCACTGGATTCCGAGGGCAGATTCAAGGGAAGGGAGGACGATAGCAATAGGTTCTTGCCTTAG 555 0.6072 MTRPFRYLGETDSSHDSPIGDSDFIVIVAALVCALICVVGLIAVARCGCLHRLRLSSTSAPPPPPAAANKGVKKKVLRSLPKLTATAESAVKFSDCAICLTEFSAGDEIRVLPQCGHGFHVYCIDAWLKSHSSCPSCRQILVVSRCDKCGGIPVHGPGSSSTAPPLDSEGRFKGREDDSNRFLP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1739 184 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Apr5g1739 184 MobiDBLite consensus disorder prediction 156 184 - -
Apr5g1739 184 PANTHER RING-H2 FINGER PROTEIN ATL8 1 176 - -
Apr5g1739 184 Pfam Ring finger domain 95 138 IPR001841 -
Apr5g1739 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 176 - -
Apr5g1739 184 SMART ring_2 96 137 IPR001841 -
Apr5g1739 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 142 IPR013083 -
Apr5g1739 184 MobiDBLite consensus disorder prediction 169 184 - -
Apr5g1739 184 CDD RING-H2_PA-TM-RING 95 138 - -
Apr5g1739 184 SUPERFAMILY RING/U-box 79 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1739 Apr-Chr5 20845932 20846802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1739 5 184 C3H Transcription Factor Family AT1G20823 58.763 4.52e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1739 - - gmx:100794614 286.574