Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1726 ATGGCGGCAAGCTGGGATGGAAGTAACGACCCCGGCAGCCAGTCTGATGATAGCTTTCATTTTGAGAGGTTGCACATTGAGCCTCTTTATGATGCTTTTGTATGTCCACTGACGAAGCAAGTTATGCGCGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGTAAGGAGAGTGGACGAAAACTGGTTTGCCCTTTGACTTTGCAAGAATTAAGAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATCGAAGAGTGGACTGCCAGGAATGAAGCTGCGCAGCTGGATATGGCTCGCCGCTCGCTGAGTATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTGAAGTATGTCCAGCACATCTGCCAAAGAAACCGGCCGAATAAGCACACTGTTCGCAATGCAGGGCTTATAGCAATGATCGTTGACATGCTGAAGAGTAGCAGCCGTAAGGTTCGTTGCAGAGCTTTGGAGACCCTTAGAGTTGTGGTGGAGGAAGTCGATGAGAATAAGGTTGTCACAGCTGAAGGGGATACTGTGCGTACGATAGTAAAATTCCTTTCGCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCCTGCTCTACGAGCTCTCAAAATCTGCAACCCTTTGTGAGAAGATTGGTTCAATCAACGGAGCCATTCTTATGTTAGTAGGAATGACAAGCAGCAAATCAGAAGATCTTTCAACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTTGAGCAGTGTGAGAATAATGTGCTGCAGATGGCTGAAAATGGTAGATTGAAGCCTCTTCTGACCCAGCTTCTTGATGGTCCACCAGAAACCAAACTCTCCATGGCTGGATACCTTGGTGAACTGGTTTTAAATAATGAAGTTAAAGTCCTTGTTGCTCGAACTGCGGGTTCATCTTTGATCAATATAATGAGTAGTGGCAATTTGCAGTCACGAGAAGCAGCACTGAGGGCTCTAAATCAGATATCATCATGTGACCCAAGCGCAAAGATTTTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCGGTGGGTCCTAATCAGCTTCCCACACGGCTAAAAGAGATCTCGGCTACAATTCTTGCCAGTGTTGTAAACTCAGGAGAAGACTTCTATTCCATTCCATTTGGTCCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCAATAGAGGGAAAACTTCTCCAAGTTCTTGTCGGACTTACTAGTTATCCAACTACAGTTCTGAGTGTTGTTGCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAGTTCATCGAGGCACCACAGAAAGAGTTGCGGGTAGCGTCCATAAAACTTCTTCAGAATTTGTCTCCACATATGGGTCAGGAGCTAGCTGATGCACTACGTGGCTCAGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCAGCTGTTGGCCTTTTAGCTGATCTACCTGAAAGGGATTTGGGCCTGACGAGACAGCTACTAGATGAAAGTGCCTTTGTGATGGTCATATCTAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCACTCGCTTTGTGACACCCTTCCTTGAAGGGCTTGTGAAGATTGTTGCCAGGGTTACATATGTCTTAGCCAATGAGCCTGATGCCATTGCACTCTGCCGAGATCACAACCTGGCCGCACTGTTTATTGACCTGCTTCAGTCCAATGGACTCGATAATGTACAGATGGTTTCTGCCACAGCTTTGGAGAATTTATCGCAAGAATCAAAAAATTTAACCAAGTTACCTGAGGTGCCATCACTGGGTCTATGTGCTTCAATCTTTTCATGCTTCAGCAAACAGCCCATCATAACTGGATTATGTAGGCTCCACCGGGGGATGTGTTCTTTAAAAGAAACATTTTGTCTTTATGAAGGGCAAGCAGTCCTTAAGTTAGTAGCCCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATCTACTTTAATAGATGATGGAGTAGATATTGAGCAAGGAGTGATGATTTTGTGTGAAGCTGAGGGAGTGAAGCCTATACTTGATGTGTTGCTTGAGAAACGATCAGAAAATTTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGACTATTGCGAACAGATGATATAGCCTTTGAAGTTTCTGGGGATCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCCAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2442 0.4484 MAASWDGSNDPGSQSDDSFHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTARNEAAQLDMARRSLSMGSPENETLQALKYVQHICQRNRPNKHTVRNAGLIAMIVDMLKSSSRKVRCRALETLRVVVEEVDENKVVTAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILMLVGMTSSKSEDLSTVEKADKTLENLEQCENNVLQMAENGRLKPLLTQLLDGPPETKLSMAGYLGELVLNNEVKVLVARTAGSSLINIMSSGNLQSREAALRALNQISSCDPSAKILIEAGILSPLVNDLFAVGPNQLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIEGKLLQVLVGLTSYPTTVLSVVAAIKSSGATISLVQFIEAPQKELRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDESAFVMVISRVIAIRQGEIRGTRFVTPFLEGLVKIVARVTYVLANEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSQESKNLTKLPEVPSLGLCASIFSCFSKQPIITGLCRLHRGMCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALSTLIDDGVDIEQGVMILCEAEGVKPILDVLLEKRSENLRRRAVWAVERLLRTDDIAFEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1726 813 SUPERFAMILY ARM repeat 458 801 IPR016024 -
Apr5g1726 813 CDD RING-Ubox_PUB 33 80 IPR045210 -
Apr5g1726 813 Gene3D - 310 486 IPR011989 -
Apr5g1726 813 SUPERFAMILY ARM repeat 121 533 IPR016024 -
Apr5g1726 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 105 IPR013083 -
Apr5g1726 813 Gene3D - 584 801 IPR011989 -
Apr5g1726 813 Coils Coil 256 276 - -
Apr5g1726 813 Gene3D - 106 308 IPR011989 -
Apr5g1726 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 811 - -
Apr5g1726 813 SMART arm_5 717 759 IPR000225 GO:0005515
Apr5g1726 813 SMART arm_5 590 631 IPR000225 GO:0005515
Apr5g1726 813 SMART arm_5 307 346 IPR000225 GO:0005515
Apr5g1726 813 SMART arm_5 672 713 IPR000225 GO:0005515
Apr5g1726 813 SMART arm_5 139 179 IPR000225 GO:0005515
Apr5g1726 813 SMART arm_5 347 392 IPR000225 GO:0005515
Apr5g1726 813 SMART arm_5 266 306 IPR000225 GO:0005515
Apr5g1726 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Apr5g1726 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 811 - -
Apr5g1726 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Apr5g1726 813 SUPERFAMILY RING/U-box 23 110 - -
Apr5g1726 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1726 Apr-Chr5 20771198 20776073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1726 2 813 U-box Gene Family AT1G76390 65.111 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1726 - - gmx:100815928 1449.88