Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1721 ATGAAAGGAGGCAAGTCCAAAACTGAATCTAAGAAGGCCGATGCCAAGCTTGCTGTGAAGAAGGGCGCCGCCGCCACCAAGGGTAGCAGGAAATCAAGCAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCAAAGAGACCTCCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAACAGTTCAACAAGGAACATCCTGACAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCAGGAGCAAAATGGAAATCGATGTCTGATGCTGAGAAAGCACCCTATGTGGCAAAATCTGAGAAACGAAAGGCGGAGTATGAGAAGAGCATGAGAGCCTATAACAAAAAACAGGCTGAAGGACCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCAGTGTCTGAGGTGAATGATGACGAGGATGATGAGGAAGGCAGTGGCGAGGAGGAGGACGACGATTAG 459 0.4946 MKGGKSKTESKKADAKLAVKKGAAATKGSRKSSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKAEYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDDEDDEEGSGEEEDDD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1721 152 MobiDBLite consensus disorder prediction 130 152 - -
Apr5g1721 152 CDD HMGB-UBF_HMG-box 44 110 - -
Apr5g1721 152 MobiDBLite consensus disorder prediction 93 129 - -
Apr5g1721 152 MobiDBLite consensus disorder prediction 63 152 - -
Apr5g1721 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 151 - -
Apr5g1721 152 SMART hmgende2 43 114 IPR009071 -
Apr5g1721 152 MobiDBLite consensus disorder prediction 1 18 - -
Apr5g1721 152 MobiDBLite consensus disorder prediction 1 50 - -
Apr5g1721 152 SUPERFAMILY HMG-box 31 118 IPR036910 -
Apr5g1721 152 Coils Coil 95 115 - -
Apr5g1721 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 151 IPR031061 -
Apr5g1721 152 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Apr5g1721 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Apr5g1721 152 Gene3D High mobility group box domain 27 123 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1721 Apr-Chr5 20732753 20734727 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr5g1721 HMG_box 2.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1721 K25507 - gmx:100500173 201.445