Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1717 ATGGGGAACTGTTTCCGAAAGCCAAATGATGGTAATAAGATTCAGCATAGAACTACCAACGCCTATAAACCCCACACTTCTCCAACAGAGAGAAGCAATGGCGTGAAATTCGTGGGAGTGGAGAAGGAAACGGTGGAAGTAACAGAGGATCGTGCAGATAGCAGTGTCAATCGAGCACAGCCACCACCCAGTAGAGGGGTCGTGACGACAAATCTTAAATCGTTCACATTGGATGAGTTGAAAAGTGCCACAAGAAACTTCAGACCTGACACGGTACTAGGCGAAGGTGGTTTTGGACGTGTTTTCAAAGGTTGGATTGACAAAAACACCTTCAAACCTTCTAGAGTTGGCGTTGGAATCCCCGTCGCCGTCAAGAAATCTAACCCCGATAGCCTCCAAGGTCTACAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAGTTCTCTCATCCAAACCTGGTTAAACTAATTGGCTACTGCTTGGAGGAAAATCAATTCCTGCTCGTGTACGAATACATGCAAAAGGGTAGCTTGGAAAGCCACCTCTTCAGAAGAAGCCCCGAACCACTTTCGTGGGATTTAAGGCTTAACATAGCCATAGGAGCTGCTAGAGGTTTGGATTTCTTGCATACATCAGAGAAGTCTGTGATCTACAGAGACTTTAAGTCCTCCAACATTTTACTTGATGGGGATTTTAATGCGAAACTCTCGGACTTTGGATTGGCAAAATTTGGCCCCATCAATGGTAGATCCCACGTAACCACGCGAGTCATGGGCACCTATGGTTACGCAGCCCCCGAATACATGGCCACGGGGCATCTCTACGTGAAAAGCGATGTATATGGTTTTGGTGTTGTTCTGCTAGAAATGTTAACAGGCTTAATTGCACTGGACACAAATAGGCCCACGGGGGAGCAGAATTTGGTGGACTACGCAAGGCCATGTCTAAGTGATAAAAAGAAACTGAAAAAGATAATGGATCCAAGTATGGACGAACAGTTTTCATCAACGGCTGCATTTCAAATAGCCCAACTTATATTGAAATGTTTAGAATCTGACCCAAAAAAGCGACCAGATATGAAGGAGGTTTTGGTAACCTTAGAAAAAGCCCAAACAATAAAATATAAACCCAAAGGGAAGAAAGTTAGCGCAGTGCATCAAACAAGTAAGCGATCAGAGGAGCATCCCTCATATAACCAACGACATTACAACAATGGTTACCCCAAATCCCGAAATCGTTCTCCTCGACGTTAG 1254 0.445 MGNCFRKPNDGNKIQHRTTNAYKPHTSPTERSNGVKFVGVEKETVEVTEDRADSSVNRAQPPPSRGVVTTNLKSFTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLIGYCLEENQFLLVYEYMQKGSLESHLFRRSPEPLSWDLRLNIAIGAARGLDFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKFGPINGRSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPTGEQNLVDYARPCLSDKKKLKKIMDPSMDEQFSSTAAFQIAQLILKCLESDPKKRPDMKEVLVTLEKAQTIKYKPKGKKVSAVHQTSKRSEEHPSYNQRHYNNGYPKSRNRSPRR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1717 417 CDD STKc_IRAK 93 369 - -
Apr5g1717 417 Gene3D Transferase(Phosphotransferase) domain 1 173 393 - -
Apr5g1717 417 Gene3D Phosphorylase Kinase; domain 1 71 172 - -
Apr5g1717 417 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 45 391 - -
Apr5g1717 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Apr5g1717 417 MobiDBLite consensus disorder prediction 14 33 - -
Apr5g1717 417 MobiDBLite consensus disorder prediction 376 417 - -
Apr5g1717 417 ProSiteProfiles Protein kinase domain profile. 87 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1717 417 MobiDBLite consensus disorder prediction 47 66 - -
Apr5g1717 417 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Apr5g1717 417 PANTHER OS01G0588500 PROTEIN-RELATED 45 391 - -
Apr5g1717 417 SUPERFAMILY Protein kinase-like (PK-like) 61 368 IPR011009 -
Apr5g1717 417 Pfam Protein tyrosine and serine/threonine kinase 91 366 IPR001245 GO:0004672|GO:0006468
Apr5g1717 417 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1717 Apr-Chr5 20699965 20702859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1717 68 367 Glycoside Hydrolase AT3G07070 49.836 7.13e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr5g1717 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1717 - - aprc:113865973 830.476