Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1715 ATGATGGGAGATGGAGGTGTAACATCATCTGCTACCATGATGCAAGTTCCTCCACCAACTGATGGAACAACCTCAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGACGGATGTTGGTTGGAAGCTGCTGCTGATGGATCTGACTTCTTGCTGCAGAGTCCTTCTTTTTCCAACCTTTACGACCCTTCATTCCCTTGGCCTGCTTTGGAGACCAACGACTACAATGAATCCCAGGAAGCTGCTTTTGGGAACCAACAAGGAAGCCAGAACATGGTTAATGTTGTTGCTGATGGTTGTAGACAGCAGTTCCAGTCTGAAACTCATTCAGTTGAAGGTGCATCTGAAGTAGTTAGAAGGTGGTGGTTTCCACCCACACCTAATCCAGGACCTGGCCCTTCTATAATGGAGAAGCTAATAAGGGCCCTCAAGTTGATCAAGTATTATAACAGGAACAAAGATATGCTTATACAAATATGGGTGCCTGTTCATAGAGGGGGTAAGCCGATTCTGGCAGCTAATGATCTTCTATTCTCTCTCGAATCAAGGTCTCCAAACCTTGCCAAATACCGAGAAATCTCTGCGAGGTATCAGTTTTCGGCAGAGGAGGAGGATTCCAAGGAGTTGGTGCCAGGATTGCCCGGTCGAGTGTTTAGGGATAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGATGAGTACCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACCTTGGCTGTTCCAATATTTGAGCAAGGAAGCAGGATGTGCTTGGGGGTTGTTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGTCCAGAACTTGAAAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACATTCAAGTATTCAGAATGTGAAGCAGCCATGCAACAGGTCCTATGAAGCTGCACTACCTGAGATTCAAGAGGTGTTGAGATCTGCATGTGAAATGCACAAGTTACCTTTGGCTCAAACTTGGGTCTCATGCATCCAACAAGGCAAAGAGGGGTGCAGACACACTGAAGATAATTATCTACTCTGTATATCTCCAGTAGAGCACGCTTGCTATGTTGGTGATCACTCTACCAGGTTTTTTCATGAGGCTTGCACTGAACATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGAGAGCTTTTATGACAAATCAACCATGCTTCTCAGCTGACATAACTTCCTTAAGCAAGATAGACTATCCACTGTCTCATCATGCGAGGTTGTTTGGATTGCGAGCTGCGGTTGCCATACGCCTTCGAAGCATTTATAATAGTACAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTTGATTGCAATGACAGTGAAGAACAGAGAAAGATGCTTACTTCATTGTCCATCATTATACAAAGGGTTTGTGGCAGTTTGCGGGTTATAACAGATGAAGAATTGGAGGAAACTAACTTGTCAGTTGATGAAGTAATAGCCCTTGCAGATAGTGGATTTGCTAGGACTCCAATTTGGTCACATCTCCAACCCAAAGGGATGGTTGCCTCATTGGAAACTGAAGAAAAATCAAGTGAAACAATGGGAAGAAAATTCTCTGACCTAAGGCAGCAACAAGAAAATCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAATGTTCTACTTCTGTTGAAGGTAGCTTACCAAGTGTGGGAATAAGTAAAACGGTAGAGAGAAGGCGAGCCAAAGCAGAGAAAACCATCACACTGCAAGTTCTTAGACAATATTTTGCTGGAAGTCTAAAAGATGCCGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCCGGCAACACGGGATAAAACGTTGGCCATCTCGAAAGATCAAAAAGGTTGGTCATTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTATTCCAATTTCCCGGATCTAGCGTCTTCAAATTTATCAGGAACCAACCTGTTCTCAACTTTGAATCAAACTGAGAATCCAAACTCAATGAGCACACAGCAACATCCTGGCTCGTTGAGCCCCGAAGGCACGTCGAAATCCCCCTCTTCCTCATGCAGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCGGAGCTACAACCTCACACGATTAACGTAGTTGGTAACAAAGATCCTATGGTTGGTGAAGATTCTGCTGATGTTGTGTTGAAGAGGATCAGAAGTGAAGCAGAACTTAAAAGCCTGAGTCAAGAGAGAGCAAAGCTCTTGCCAAGATCGCATAGCCAGGAAACACTTGGTGAACAATCTAAAACTCAGTATCAGAGGCCCTTATTGGAAACCAGTCGCAAGGTGGATGCTCAGAGAGTTAAAGTCACGTATAGAGATGAGAAAAGCCGGTTTCGGATGCCAAAGAATTGGGGTTATGAACATCTTTTGCAGGAAATTGCTAGAAGATTTAATGTGAGTGACATGAGCAAATTCGATGTCAAATATTTGGATGATGATTGTGAGTGGGTATTACTCACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAGTGGTACCATCAAACTCTGTCTACAGCCTTCTAGTCATTCTATGAGAAATTCTTTAGAGTTTAGATAA 2697 0.4334 MMGDGGVTSSATMMQVPPPTDGTTSMDFDYMGELFLDGCWLEAAADGSDFLLQSPSFSNLYDPSFPWPALETNDYNESQEAAFGNQQGSQNMVNVVADGCRQQFQSETHSVEGASEVVRRWWFPPTPNPGPGPSIMEKLIRALKLIKYYNRNKDMLIQIWVPVHRGGKPILAANDLLFSLESRSPNLAKYREISARYQFSAEEEDSKELVPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGTLAVPIFEQGSRMCLGVVEVVMTTQQINYGPELESVCKALEAVDLRSSKHSSIQNVKQPCNRSYEAALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKEGCRHTEDNYLLCISPVEHACYVGDHSTRFFHEACTEHHLLKGQGVAGRAFMTNQPCFSADITSLSKIDYPLSHHARLFGLRAAVAIRLRSIYNSTDDFVLEFFLPVDCNDSEEQRKMLTSLSIIIQRVCGSLRVITDEELEETNLSVDEVIALADSGFARTPIWSHLQPKGMVASLETEEKSSETMGRKFSDLRQQQENPILKGNLDCVRECSTSVEGSLPSVGISKTVERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASSNLSGTNLFSTLNQTENPNSMSTQQHPGSLSPEGTSKSPSSSCSQSSISSHSCSSMSELQPHTINVVGNKDPMVGEDSADVVLKRIRSEAELKSLSQERAKLLPRSHSQETLGEQSKTQYQRPLLETSRKVDAQRVKVTYRDEKSRFRMPKNWGYEHLLQEIARRFNVSDMSKFDVKYLDDDCEWVLLTCDADLEECIDVCQSSESGTIKLCLQPSSHSMRNSLEFR* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1715 898 MobiDBLite consensus disorder prediction 680 726 - -
Apr5g1715 898 CDD PB1_NLP 806 886 IPR034891 -
Apr5g1715 898 ProSiteProfiles RWP-RK domain profile. 575 656 IPR003035 -
Apr5g1715 898 Pfam PB1 domain 806 886 IPR000270 GO:0005515
Apr5g1715 898 Gene3D - 176 291 IPR029016 -
Apr5g1715 898 MobiDBLite consensus disorder prediction 774 794 - -
Apr5g1715 898 Pfam RWP-RK domain 588 636 IPR003035 -
Apr5g1715 898 PANTHER PROTEIN NLP8 23 893 IPR045012 GO:0003700
Apr5g1715 898 SUPERFAMILY CAD & PB1 domains 804 889 - -
Apr5g1715 898 SMART PB1_new 804 887 IPR000270 GO:0005515
Apr5g1715 898 PANTHER PROTEIN NLP4 23 893 - -
Apr5g1715 898 MobiDBLite consensus disorder prediction 779 794 - -
Apr5g1715 898 Gene3D - 805 886 - -
Apr5g1715 898 ProSiteProfiles PB1 domain profile. 804 887 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1715 Apr-Chr5 20660987 20666432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1715 26 889 NLP Transcription Factor Family AT1G20640 49.659 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr5g1715 PB1 1.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1715 - - gmx:100785135 1434.85