Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1682 ATGCTCGATTCGGTTCTTCTGGCACTTTTCTTGCCCTGCCTTGGCATGAGTGCTGTTTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACTACGCATCACCACCCCAGCCTCGGGCAACCGGTCAAACCCGTCTCTGACAAGGGTTTATCCTCATTGGAGTTGGAAAAACTCCCCACAATCACCGGCAAAGAACTTATTTTGGGCACCGAATGCGCCGTCTGCCTCGACGAGATCGAGAACGACCAACCAGCTCGACTGGTCCCTGGTTGCAACCACGGCTTCCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCCCTTTGTCCCGTTTGTAGAACCAAGCTCGACCCTCAAATTTTCATTTCCCAAAGCCCATGCTGA 387 0.5375 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHHPSLGQPVKPVSDKGLSSLELEKLPTITGKELILGTECAVCLDEIENDQPARLVPGCNHGFHVHCADTWLSKHPLCPVCRTKLDPQIFISQSPC* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1682 128 Pfam Ring finger domain 71 114 IPR001841 -
Apr5g1682 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 125 - -
Apr5g1682 128 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Apr5g1682 128 SUPERFAMILY RING/U-box 56 120 - -
Apr5g1682 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 120 IPR013083 -
Apr5g1682 128 SMART ring_2 72 113 IPR001841 -
Apr5g1682 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1682 Apr-Chr5 20365726 20366790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1682 1 128 C3H Transcription Factor Family AT5G42200 56.618 1.76e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1682 K19037 - gmx:100776003 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0664 9 10868329 10868715 Apr5g1682 5 20365726 20366790 PCT